RNA id: TU16520


Basic Information

Item Value
RNA id TU16520
length 217
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G13334
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18826194 ~ 18901976 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTACCACACTggtttacaaagaatggtgtgaaaagggaaaaacatccagtatgcggcagtcctgtgggcgaaaatgccttgttgatgctagaggtcagaggagaatgggccgactgattcaagctgatagaagagcaactttgactgaaataaccactcgttacaaccgaggtatgcagcaaagcatttgtgaagccacaacacGTACAACCTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16425 lncRNA downstream 660424 18162787 ~ 18165770 (-) True G13254
TU16302 lncRNA downstream 1285849 17538034 ~ 17540345 (-) False AMCG00016376
TU16264 lncRNA downstream 1329847 17495923 ~ 17496347 (-) True G13129
TU16261 lncRNA downstream 1331848 17493855 ~ 17494346 (-) True G13126
TU16213 lncRNA downstream 1448655 17375266 ~ 17377539 (-) True G13091
TU16525 lncRNA upstream 156429 19058405 ~ 19058673 (-) True G13339
TU16528 lncRNA upstream 175392 19077368 ~ 19077823 (-) True G13341
TU16555 lncRNA upstream 186248 19088224 ~ 19088632 (-) True G13366
TU16588 lncRNA upstream 263610 19165586 ~ 19253414 (-) True G13392
TU16615 lncRNA upstream 354662 19256638 ~ 19256919 (-) True G13413
AMCG00016401 mRNA downstream 390166 18420753 ~ 18436028 (-) True AMCG00016401
AMCG00016400 mRNA downstream 426436 18380464 ~ 18399758 (-) True AMCG00016400
AMCG00016399 mRNA downstream 476817 18330193 ~ 18349377 (-) True AMCG00016399
AMCG00016398 mRNA downstream 533335 18274230 ~ 18292859 (-) True AMCG00016398
AMCG00016396 mRNA downstream 563996 18259160 ~ 18262198 (-) True AMCG00016396
AMCG00016403 mRNA upstream 104107 19006083 ~ 19014749 (-) True AMCG00016403
AMCG00016404 mRNA upstream 123862 19025838 ~ 19039504 (-) True AMCG00016404
AMCG00016409 mRNA upstream 207166 19109142 ~ 19143518 (-) True AMCG00016409
AMCG00016410 mRNA upstream 253358 19155334 ~ 19161728 (-) True AMCG00016410
AMCG00016414 mRNA upstream 282962 19184938 ~ 19205594 (-) True AMCG00016414
TU16024 other downstream 1965015 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 1965015 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 1965015 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 4034225 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 5267010 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 189263 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 1233221 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 4553116 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 4797173 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 5409061 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile