RNA id: TU16865


Basic Information

Item Value
RNA id TU16865
length 1305
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G13615
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20003149 ~ 20004940 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTGCTACGTGCATAATGAGTGTTCCACACCAGTGACGTGTGGTGGAAATGGTGGCTTTAGCCCAGTTTTACctgctgttttctttatttgctgCTCGGTTTCCAGTTGGGATTGAAGTGGCTTTTCAGAGGTTCCCAGCACTTGTAATAGTTCTTATCCAGACGATTACAGGTGTCCTCTGCCACGCGCTCTGGCTTCAGGTCGGCCCCGCTGGCTTTCTCAAAGCACTCGCTGTCGGGGCCGTGCGGGGTCATTATGCTGTGAAGACTGGCCCCTCCTGGCTGGAAACCTTCCTCCTTGGCCTCGTAGTAACCTTTGATCAAGCCCATGAACTCACTCATGCAGTTCCCTAACGCACAGAAGGCACTGTAAAAACTTTGGACATTGAGGAACACTTTTCACTGAACCCACAAGAATGTGCCTCTGTTAGTTAGTGAGGGGGATAATTTCGATTTCATTACTTGTCATGGGAGCCCAATTATAGGAAAACCATGAACCATGATATTAAATTCATAtgaagctttatttatttatattcactgCATGACCAACAAATCTGGAGTCACGTGAAGGTCCCATGATGTGGCATTTAAGCAGGCTGACTCAATGGGGTGAGTTTCATCATTCTCAAAAGTTACTGGCTTCAGCCTCTGTGCTCAAGGTTCATCCTCTTCCAACCACGTATCCTGTCCACTGAACCCACCAATCCCAGAGCACCATCCCCGCCCCACCCCTCCCTGGCCTCCTGCCCAGCCTTACTGTGGTAGTACGGGGGCCTGAACGTGTGGTCAGCAACCCCCCACCGTGGGGGAAAGATGACAAAGTCTGCAATAGCCACACCGGGGCGAGTGGACTTGGCTGTCAGCACCGTGAAGATGGAGGGATCCTGAGAAAAGGCACAAAGCAGACTTGGATACCTAAAACTGCACTTGATTGAAAATTGATACTTTAATTACAGACCTCCCACAAAAACCCATACAGGTTTAAATCAACAGCTTATTGATTCATAGGTCTTTTTTATAATCTTAtacaatagtttattttgtctgtcaCAGTGTCTCGCTGCAGAGCCTTCTGAAGACAGCACACCAGTGTAGGCAGTTCTGAATTATTCATAGGAGGTCGAGTGCTTTATCTGAGGGGTTGTCCAATCATTTCCATAAGAGAAACCTGATGTTCTGACTAGGTTACACAATGTTTGCACAGTGCCGTGTGTACATGCCTGATGTGAGGTTTCAGGTGCGGACTAGAGCAGTGTGGGGGAATGACCCAGCTTGGAGTAAATCATAAGCCATGTCTTTTC

Function

GO: NA

KEGG:

id description
ko04514 Cell adhesion molecules

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16616 lncRNA downstream 744592 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 746230 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 749735 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 914517 19088224 ~ 19088632 (-) True G13366
TU16528 lncRNA downstream 925326 19077368 ~ 19077823 (-) True G13341
TU16939 lncRNA upstream 310802 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 463306 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 481941 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 590389 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 625532 20630472 ~ 20636938 (-) False AMCG00016479
AMCG00016440 mRNA downstream 23225 19969592 ~ 19979924 (-) True AMCG00016440
AMCG00016437 mRNA downstream 121324 19880271 ~ 19881825 (-) True AMCG00016437
AMCG00016433 mRNA downstream 128255 19872617 ~ 19874894 (-) True AMCG00016433
AMCG00016434 mRNA downstream 131847 19869693 ~ 19871302 (-) True AMCG00016434
AMCG00016436 mRNA downstream 137454 19861454 ~ 19865695 (-) True AMCG00016436
AMCG00016444 mRNA upstream 983 20005923 ~ 20007711 (-) True AMCG00016444
AMCG00016445 mRNA upstream 12440 20017380 ~ 20031020 (-) True AMCG00016445
AMCG00016442 mRNA upstream 26491 20031431 ~ 20040137 (-) True AMCG00016442
AMCG00016443 mRNA upstream 38410 20043350 ~ 20060165 (-) True AMCG00016443
AMCG00016446 mRNA upstream 66808 20071748 ~ 20082592 (-) True AMCG00016446
TU16556 other downstream 897768 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3141970 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 3141970 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 3141970 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 5211180 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 130257 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 3450152 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3694209 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4306097 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4306097 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile