RNA id: TU17055


Basic Information

Item Value
RNA id TU17055
length 1097
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G13766
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20486881 ~ 20492021 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaaaagtgaagcgctgtgaatactctccggatgcactgtatacctGTGATTTGGTTTAAAGTCGGCAAATAAAGGGTTAGTCTAAGAGCTTGTAGGCTGACATGATTAAACCGTTTCATTTTGTTCTTAAACCCTctattgtgtttaataaattCTAGGTATATCTACctgtaaaatacagaaaaactacaaatccTTCTAACATTTCTGGTGAAAATGCTGATGGATTTTTCTAGGTGCATTTCAGACAGGATTTTCAGTAGTCTAGTTACATCAAAGCAAACAATGGTCTTCCCCTCTGCTGCAGAAATTCTAAGGTGCCTTTGACAAAAGTGAAgagctgtgaatactttctggatgcactgtatttgaAGTGAAAAGTTATGTCTAACttaggacaaaaaaacaaaacagattgcAGATGAAGAGTTTGTGGAAGAAATCAAGAGTGAAAATGCAATGccaagcaaagcaaagcaaagcaaaaggAAACATATTGTCGAGGCCTGCATCCAGCAGTAGATCAATATAGTGATagtgatgtgtatatatacacgtcattttattttttgagatcCTGTCTTAAAACCTTCAGTGTTCAGTTGTTGTTGTAGCTGCAGATACAAAAGGAGATGATACGCTTTATTTCAATACACTGCAGTGGCAGCCCAGCAACACAAATGTCACCGCACTAATGTGTCCTGTTTGGCCACGGCCGAATGACCCTCTCATGAAAGAGGCGAAAATGTCCCCTGAGCTATAGCTTTTACACAacgggataaaaaaaaaaacaataataactgaTCGAGCTACTTACACCAGGGTCGTCCTCCTCATCCGCCATTCTGGCTCCAGCTGAGGCAGCAATGGTAGCGACTGTTGTGAACCTTAGTAAACACACTGTAAAACCACCACGATCGGGATTTGCACGCCAAATACAACTGTCAAACAAcgagtgaaaaataaatatttaatttgacaaaaacagaacagtaaTCTCAATTATCTAGCAAGAAGAAACAAATAGGGTATCCAACTTGATCAAGGACTTCCGGTGGCGTGGATCACGTGCCCTTACACTACAATTGGTCTGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16939 lncRNA downstream 170302 20315742 ~ 20316579 (-) True G13680
TU16865 lncRNA downstream 481941 20003149 ~ 20004940 (-) True G13615
TU16616 lncRNA downstream 1228324 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 1229962 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 1233467 19165586 ~ 19253414 (-) True G13392
TU17088 lncRNA upstream 103308 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 138451 20630472 ~ 20636938 (-) False AMCG00016479
TU17108 lncRNA upstream 154815 20646836 ~ 20652268 (-) True G13806
TU17110 lncRNA upstream 174121 20666142 ~ 20666980 (-) False AMCG00016480
TU17114 lncRNA upstream 269402 20761423 ~ 20761693 (-) True G13812
AMCG00016471 mRNA downstream 39850 20441545 ~ 20447031 (-) True AMCG00016471
AMCG00016470 mRNA downstream 61131 20421954 ~ 20425750 (-) True AMCG00016470
AMCG00016472 mRNA downstream 81105 20401388 ~ 20405776 (-) True AMCG00016472
AMCG00016473 mRNA downstream 88132 20393597 ~ 20398749 (-) True AMCG00016473
AMCG00016460 mRNA downstream 107749 20372554 ~ 20379132 (-) True AMCG00016460
AMCG00016477 mRNA upstream 14827 20506848 ~ 20510468 (-) True AMCG00016477
AMCG00016476 mRNA upstream 25778 20517799 ~ 20523757 (-) True AMCG00016476
AMCG00016479 mRNA upstream 124488 20616509 ~ 20636960 (-) True AMCG00016479
AMCG00016480 mRNA upstream 174729 20666750 ~ 20683024 (-) True AMCG00016480
AMCG00016481 mRNA upstream 431959 20923980 ~ 20973210 (-) True AMCG00016481
TU16905 other downstream 351334 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 1381500 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3625702 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 2963071 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3207128 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 3819016 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 3819016 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 4389127 24881148 ~ 24882098 (-) True G14305

Expression Profile