RNA id: TU17179


Basic Information

Item Value
RNA id TU17179
length 473
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G13861
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 21785244 ~ 21785716 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTACTCTCTTCTCGTTCTTGTTATTCATCTGCGCGGCGGCCAGCTCCTTCCCCTTGATGATGTCCTCCAGCAACTCTGAGCCCTGCACCTTCTCCCGGCGGAACGTCTCGTCCATGTCCCGGTGCTGCTCCAGCAGGGTGTCGTATTCCTGCTTCAAGACACTGTTCCCCTCCTGCACCTCCTCTACCCGGCACTGAAGGTCACTCCAGTCCGACTCCACCACCCCCAGGCGGCTCTTCAGCTCAAACATCCTGAACTCCCCagagacagcaaatgtcaacaGCTGTTGGAAATAAGGTGGACCACAGCACTCCAAAAAAAACAGTGTTGGAGACTTTTCTGGGAGAGGTATGGAATGACAGTGACTGGGGTGACTGACACTTATCATCTTAATCTAAATGGAGTTTCCTATTAAAAGTGTGTTCCTATGTAGTTTCAGAGTCAATTAGTCTGTTGCGCTATATGGTACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17178 lncRNA downstream 2948 21782064 ~ 21782296 (-) True G13860
TU17121 lncRNA downstream 877126 20907918 ~ 20908118 (-) True G13819
TU17114 lncRNA downstream 1023551 20761423 ~ 20761693 (-) True G13812
TU17110 lncRNA downstream 1118264 20666142 ~ 20666980 (-) False AMCG00016480
TU17108 lncRNA downstream 1132976 20646836 ~ 20652268 (-) True G13806
TU17202 lncRNA upstream 356237 22141953 ~ 22142185 (-) True G13884
TU17205 lncRNA upstream 386834 22172550 ~ 22172940 (-) True G13887
TU17211 lncRNA upstream 404200 22189916 ~ 22226828 (-) True G13891
TU17214 lncRNA upstream 450455 22236171 ~ 22236399 (-) True G13893
TU17216 lncRNA upstream 574798 22360514 ~ 22360776 (-) True G13895
AMCG00016485 mRNA downstream 75555 21688811 ~ 21709689 (-) True AMCG00016485
AMCG00016484 mRNA downstream 539826 21074094 ~ 21245418 (-) True AMCG00016484
AMCG00016483 mRNA downstream 772883 20986992 ~ 21012361 (-) True AMCG00016483
AMCG00016481 mRNA downstream 812034 20923980 ~ 20973210 (-) True AMCG00016481
AMCG00016480 mRNA downstream 1102220 20666750 ~ 20683024 (-) True AMCG00016480
AMCG00016486 mRNA upstream 125154 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016488 mRNA upstream 163552 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016487 mRNA upstream 231408 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016497 mRNA upstream 291901 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016504 mRNA upstream 2055346 23841062 ~ 23862739 (-) True AMCG00016504
TU16905 other downstream 1649697 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 2679863 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 4924065 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 1669376 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 1913433 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 2525321 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 2525321 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 3095432 24881148 ~ 24882098 (-) True G14305

Expression Profile