RNA id: TU17653


Basic Information

Item Value
RNA id TU17653
length 263
lncRNA type read_through
GC content 0.56
exon number 2
gene id G14245
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24716726 ~ 24780266 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCTGGGGTGAGCTTCAGTATGTATTTCCTCGTGTAGGTGTTGAAGACCTTCACCAGGGCCAGGTACATGTGAAAGGCCTCCAGGCCCATCCAGGTGAAGGAGACGAGCAGGAAGTAGTGCAGGAAGAAGGCGACAGAGATGCAGAGGCCGATGGCGTTGCTGTACAGCGCCAGCCAGGAGTCTAACAGGAACACCATGTTGAGCAGCAGTAGGGCTGTGCACAGGTGCATCAGGATCTTTGAGGGGTAGTCCTTACGCAGC

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17623 lncRNA downstream 32191 24683065 ~ 24684535 (-) True G14222
TU17619 lncRNA downstream 98381 24615787 ~ 24618345 (-) True G14218
TU17615 lncRNA downstream 110405 24606108 ~ 24606321 (-) True G14214
TU17614 lncRNA downstream 114719 24601698 ~ 24602007 (-) True G14213
TU17593 lncRNA downstream 150048 24553692 ~ 24566678 (-) True AMCG00016538
TU17733 lncRNA upstream 124855 24905121 ~ 24906546 (-) True G14311
TU17761 lncRNA upstream 227708 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA upstream 227890 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA upstream 227890 25008156 ~ 25010763 (-) False AMCG00016562
TU17860 lncRNA upstream 341824 25122090 ~ 25122375 (-) True G14400
AMCG00016538 mRNA downstream 149770 24554207 ~ 24566956 (-) False AMCG00016538
AMCG00016539 mRNA downstream 166601 24548377 ~ 24550125 (-) True AMCG00016539
AMCG00016534 mRNA downstream 323871 24375867 ~ 24392855 (-) True AMCG00016534
AMCG00016535 mRNA downstream 340919 24372069 ~ 24375807 (-) True AMCG00016535
AMCG00016532 mRNA downstream 353688 24355911 ~ 24363038 (-) True AMCG00016532
AMCG00016550 mRNA upstream 9882 24790148 ~ 24800194 (-) True AMCG00016550
AMCG00016551 mRNA upstream 22470 24802736 ~ 24809912 (-) True AMCG00016551
AMCG00016552 mRNA upstream 95598 24875864 ~ 24878227 (-) True AMCG00016552
AMCG00016555 mRNA upstream 103637 24883903 ~ 24894419 (-) True AMCG00016555
AMCG00016556 mRNA upstream 150551 24930817 ~ 24953633 (-) True AMCG00016556
TU17551 other downstream 399924 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 399924 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 1016471 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 1260915 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 4581179 20135197 ~ 20135547 (-) False AMCG00016453
TU17725 other upstream 100882 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 231075 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 232098 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 300302 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 493398 25273664 ~ 25277478 (-) False AMCG00016579

Expression Profile