RNA id: TU17733


Basic Information

Item Value
RNA id TU17733
length 1385
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G14311
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24905121 ~ 24906546 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTTTAATCGATttattgtcaatttaaattacatgaaaCATGACAGACAGCTTGAGACAAAACTTGTGTTAAATTCTATGTTCTACTActgtattacatgttttaattgttcagTGATTCAGGAGGTTTTTGGAAGCTGAAATTGTGCCAAAACTGAGTTACAAACAATCTCGTTATATGCTTGTTTAAAGGCACACCTTAGCTATGCATCAACAAGCACAGGGTTAATACAGTCACACTCGTCTACACAAACAGTGTCTACCAGATCTGACAAGACATCCGCATTTGGATTGGGATTTTTGTTCCATGAAAACTATTTTAAGGGGGaattaaaaccaataaaataaaatccacccCCCCTCAGTTTAGGATTCTGTAAATCGATCCTGGTCTCAGTACTGTTCATCTTCAAACACACAGAGGCACAACGGTCTGGTGGACACTGTATAGCTATTTGGCCTTGACACTGAATTTAATCTAAAATTGGATTCTGTATTTTGAAGAAACCCCCTGTTGGAAGAAggcattgaaaaataattaaaattaaattaaaacatctatGCCAGTGGGAgtcttttgtttcttaaaaaagaaaagatgactGTACTAAACGGTCTATGAAAACCTGAGCctccaattaaattaaaccctgTACATACTTCTCTTCCCCTTTCAGCACTCTAGAAaaactgcaacaacaaaaCTTTGTGCATTTTTTCTGACATGAAACGGAATCTAAAACTATAAAATCGGACTTCGCTGCCATGAACGGTACAGCTGGGGAAACGCAGCAGAAACCACACAGACGGCAAGGGCCTCCACTCTCCTGGCATCAGATACCAGTGCAAACAGCACAACACATTGCATCCCATACACAGAGCTCACCCGACACGCCCTGCCCACACTGGGGAATGAAGACCGGCGCCTGCTACACCCTGCCCACACCGGGGAATGAGAAGACTCGCACGCTGTAGAGACTTTGCATctccattaaaaatataaaaactaaatttacataaaatacctCTGCCTGGTCACTACGCTTTTCTGTATGTACACTAAGGTAAGGATTCAAAGGCATTTAAACCTCACGAGTCACTGTACAGATGCATAACTATTAAACCCATAGTACATTGTGGCTCAGTAGTATCTTAGTCTTGACATACAGACTCGAGTACTGGAGGCTAGATACTGCTAGATCTCAGAGCCCAGCACTGCTCTGACCTGCGGAGCCAAGGGCACTTCCAGGCCCTTGAGAAATGACACTTGATTTCCATATGGAGGAGCGATCAGAGTGGAGCCACTCACAGGGAACCGATGAGCTGAAAAGGCTCATTCAAAAAACACTGCGGTTTCATCTGACCAACCATTGCTTCCCCATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17653 lncRNA downstream 124855 24716726 ~ 24780266 (-) True G14245
TU17623 lncRNA downstream 220586 24683065 ~ 24684535 (-) True G14222
TU17619 lncRNA downstream 286776 24615787 ~ 24618345 (-) True G14218
TU17615 lncRNA downstream 298800 24606108 ~ 24606321 (-) True G14214
TU17614 lncRNA downstream 303114 24601698 ~ 24602007 (-) True G14213
TU17761 lncRNA upstream 101428 25007974 ~ 25011255 (-) True AMCG00016562
TU17763 lncRNA upstream 101610 25008156 ~ 25011255 (-) False AMCG00016562
TU17765 lncRNA upstream 101610 25008156 ~ 25010763 (-) False AMCG00016562
TU17860 lncRNA upstream 215544 25122090 ~ 25122375 (-) True G14400
TU17952 lncRNA upstream 498349 25404895 ~ 25405101 (-) True G14472
AMCG00016555 mRNA downstream 10702 24883903 ~ 24894419 (-) True AMCG00016555
AMCG00016552 mRNA downstream 26894 24875864 ~ 24878227 (-) True AMCG00016552
AMCG00016551 mRNA downstream 95209 24802736 ~ 24809912 (-) True AMCG00016551
AMCG00016550 mRNA downstream 104927 24790148 ~ 24800194 (-) True AMCG00016550
AMCG00016545 mRNA downstream 118711 24762569 ~ 24786410 (-) True AMCG00016545
AMCG00016556 mRNA upstream 24271 24930817 ~ 24953633 (-) True AMCG00016556
AMCG00016564 mRNA upstream 66501 24973047 ~ 25001455 (-) True AMCG00016564
AMCG00016562 mRNA upstream 104262 25010808 ~ 25013478 (-) False AMCG00016562
AMCG00016565 mRNA upstream 150014 25056560 ~ 25057570 (-) True AMCG00016565
AMCG00016563 mRNA upstream 166624 25073170 ~ 25080493 (-) True AMCG00016563
TU17725 other downstream 23023 24881148 ~ 24882098 (-) True G14305
TU17551 other downstream 588319 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other downstream 588319 24311037 ~ 24316802 (-) False AMCG00016531
TU17295 other downstream 1204866 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 1449310 23455092 ~ 23455811 (-) True G13962
TU17766 other upstream 104795 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 105818 25012364 ~ 25015343 (-) False AMCG00016562
TU17849 other upstream 174022 25080568 ~ 25083699 (-) True G14392
TU17858 other upstream 367118 25273664 ~ 25277478 (-) False AMCG00016579
TU18038 other upstream 846449 25752995 ~ 25754472 (-) True G14534

Expression Profile