RNA id: TU18183


Basic Information

Item Value
RNA id TU18183
length 1546
RNA type TUCP
GC content 0.36
exon number 2
gene id G14637
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26081503 ~ 26083167 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGCTCTTCTCTTTATTACAGCATCTGTTTATAGCAAGAACATGTCATCGTGGCCAGTGAACTAGGACTGACAGGCCCAAGTGAAGTCACAACTGCAAGaaagtaaaaagcaaaatattgatttcacattgacattttttgttgtttttatatttatgaacaccaactgtattttgtttaaaacaaaagcacaacaaaTGTTTCAGGGAAGCAGTCTGACAGTTAGTAAATGACCTTCTCCAGTATGGTTCAGAGCCACACTAAATAGCaaattctatttaaatataCCCTTTCAACAAATCTATGTAGATTCATAATGTTAGTACAACATTGCTTTGTTTACAGTGTAGTAACTATTACCACTTCACAGTGTAATAATTATTGCAAACCATTTTAACCAATTTAAGGCTTCTGAATTCAATAGCCATGAAATTCTAGTGTTACCTCTTGTGTCAAAGTTCTGGGGCCCAAcagtttcattttgtaaaactaATTTCATATTCAGCAATAGCTGTCAACATAATCTAAAAGGCCCTGTTTGTTCTTAGAACTTTCAATAAGTTtcacaactttaaaataaaagctaaatctattaaaaatgtctgaagttgatccattttatttaatgtggcTGATACACAGATGTTTAAACAAGCGTTTTTTCCAtagcatgtctttttttttgctgttctaTAGAGGATATTGACCGGGTGGAAGGAGACTTGGGACCAAGAGTAAGAGTAACAAAGTCCTTCTGGGAGAGGAAAcaaaggggagaggagagacacCATAACCATATACACCATCACGCTTACGTGAAGTCTTGCAAAAACAAACCCTGGATACATAGTATATCGATTCCATGCTGGCTCCTGCCCTTCCCACTGATCCATTCTCAGCAATGCCATTCAGGGCTGTGTTGTGCAGTAACTGCTGCTCACAAAGCAAGGAGCTGCTAACCCCAGCCTGCCCAGCTGCACTAAACAAAGCGCTCAGCACTGGGCTGTGTGACCCGCTGGCTTTTTTGAGTACTGTTTCTGAAAGAGTGAATTAcTTCAATCTCATGAACACAATCTCACGTGGGCAGAATGGGGTTAACTACATTCACTGTCCAACCAgttttttctgcttgttttggAGAAATGAAGTCAGGTTTGCGTGGCTGACCCTCCCTTTGGGCCGGCGGCAGGCCGGCTGGTGAGGAGCAGGGAGGGTCAGAcggtgggaggggggggagcCTGGCGCTGCAGCAGGTACTGGTGAATGTCCTCGGCGTCACGCTTCAGCCAGGCGGCGTTCAGGAGGATGTTCTCGCAGCACTGCTGCACTGTGCGCTCCGCCGCTGGTGCGTGGTGGCTCTCGAAAAAGCTCTGCGGCAAGAAGGACAGGCTGGTGAGGAACGAGCGACTCTGCTCTGTTCAGGCCCTGTCTGCACACTGCTGTGGCTGTAGATGTGCCAGAGGGCCGCTCTGATTAGCAATGAGCCATTCCAGCCGAGGAGGGTATACAAGAGTACATAATGTCTgcagttaaaatgaaaataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18115 lncRNA downstream 59240 25971786 ~ 26022263 (-) True G14585
TU18117 lncRNA downstream 101940 25973534 ~ 25979563 (-) True G14587
TU18107 lncRNA downstream 159955 25918030 ~ 25921548 (-) True G14578
TU18019 lncRNA downstream 406303 25672304 ~ 25675200 (-) True G14517
TU18009 lncRNA downstream 472444 25604780 ~ 25609059 (-) True G14507
TU18197 lncRNA upstream 14561 26097728 ~ 26098972 (-) True G14650
TU18219 lncRNA upstream 65138 26148305 ~ 26149084 (-) False AMCG00016617
TU18227 lncRNA upstream 98577 26181744 ~ 26184778 (-) False G14676
TU18228 lncRNA upstream 98577 26181744 ~ 26184778 (-) False G14676
TU18283 lncRNA upstream 192010 26275177 ~ 26303459 (-) True G14723
AMCG00016601 mRNA downstream 255657 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016599 mRNA downstream 354956 25706081 ~ 25726547 (-) True AMCG00016599
AMCG00016600 mRNA downstream 378176 25676569 ~ 25703327 (-) True AMCG00016600
AMCG00016597 mRNA downstream 439170 25611563 ~ 25642333 (-) True AMCG00016597
AMCG00016594 mRNA downstream 597793 25449909 ~ 25483710 (-) True AMCG00016594
AMCG00016614 mRNA upstream 21749 26104916 ~ 26117450 (-) True AMCG00016614
AMCG00016617 mRNA upstream 64343 26147510 ~ 26149543 (-) True AMCG00016617
AMCG00016615 mRNA upstream 68444 26151611 ~ 26155450 (-) True AMCG00016615
AMCG00016616 mRNA upstream 75859 26159026 ~ 26159922 (-) False AMCG00016616
AMCG00016624 mRNA upstream 129219 26212386 ~ 26215060 (-) True AMCG00016624
TU18038 other downstream 327031 25752995 ~ 25754472 (-) True G14534
TU17858 other downstream 804025 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 997804 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 1066160 25012364 ~ 25015343 (-) False AMCG00016562
TU17766 other downstream 1069725 25011341 ~ 25011778 (-) False AMCG00016562
TU18222 other upstream 73354 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 98577 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 98577 26181744 ~ 26184778 (-) True G14676
TU18278 other upstream 155915 26239082 ~ 26241106 (-) False AMCG00016623
TU18405 other upstream 344172 26427339 ~ 26518279 (-) False G14816

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU3726 True 1751 lncRNA 0.50 2 NC_053112.1 8486118 ~ 8520808 (+)