RNA id: TU18197


Basic Information

Item Value
RNA id TU18197
length 1222
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G14650
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26097728 ~ 26098972 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGAAGGCTGTAAGGCACAAGTGATCCTGCCCCAACGCTCAGGAGCTCCTCCAGTAAGAGCAGCCAGTGCAGACAAATAAAGCAGACACAAGGCAGTCAGTATCTCAGTGTACTTTATTCTCCTGTTCTCTAAAGCTGAAAGCACACACAGGACAGAAACAAGTAGCACTGAGGAATGGTCAGAATCCCCCATTTGCAGaacagcatttttctttttcccccaataagtacaaaataaccacaaaaggcaataatagcaataaaaaaaaaaaaaaaaaaaagagcaaaatcAGATTCAGGGAGCTGGAAAACAAGCCCGCCTGTGCCAGAGCCACCAGTGCTTCCCTCTCAGCAGCAGTGGTTGAAACCCCCCCATCACACCGGACTGACAGTCCAGCTCTGTGCTGACAGTGGGCGGGCAGGAGGAGCGGAGGGCAATGAGGTGCCTGCTCTAGACTGGTAAGTGGTCAGCAACGCCCTCTGGGACATGCTGCCTGTCCTCATGAGAAGCACCTGATCACAGTAACAGGAGACTAAACTGGGACTTGTGCCCTTCAGATCTTAAAACAGACCCTTTTGCCTTGCCACCTGCCCCTACGATGTTTCTGTATTCAGTTTGCTGCATCTGATATGTAAAAACCAGATCAAAAcatcatgagaaaaaaaaaaaagctattgcACAATAAAAGGGAATATGAAGGTTTAGAAGGATCTTAAGAGCAATGCATGGCAGTCCAGGCATGGGGAAATATATATGGATCAATATTGTGATCTGCCATGACTTTAGACCAGCAAAGCTTTAATGGGGTTTATTAAAACCCAGTTAAAATTCCTGCCACTGGCTACACTGCAGAGATGCCTAGAATGAAAGCCACACTAACAGCCATTTCAGCCCAGACATCACTTTTGCATAAATGTGGTTATGGTGAGTATGTTAACATAGCAATCACCAACCTATAGATAAAAACTCAAATACAGGAACACAAGGGAAAAGTGTCAGTGTCTGACAGATCGGTAATGCTGTGCCGTAAGAcatctttgtatttttgtgcattATAAATCACGCATTTAACACACAAAAAGTATTACACAATGTATTGCTGAATGGTATCCAGTCTAATTAGGATAACAATAATAAGTTCCTGTGGAGTAGAATACCGAGTTACCAGTCTGATCAGgccacacacacccccccccagACTCCAAAACCCCTCTCCTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18115 lncRNA downstream 75465 25971786 ~ 26022263 (-) True G14585
TU18117 lncRNA downstream 118165 25973534 ~ 25979563 (-) True G14587
TU18107 lncRNA downstream 176180 25918030 ~ 25921548 (-) True G14578
TU18019 lncRNA downstream 422528 25672304 ~ 25675200 (-) True G14517
TU18009 lncRNA downstream 488669 25604780 ~ 25609059 (-) True G14507
TU18219 lncRNA upstream 49333 26148305 ~ 26149084 (-) False AMCG00016617
TU18227 lncRNA upstream 82772 26181744 ~ 26184778 (-) False G14676
TU18228 lncRNA upstream 82772 26181744 ~ 26184778 (-) False G14676
TU18283 lncRNA upstream 176205 26275177 ~ 26303459 (-) True G14723
TU18337 lncRNA upstream 295960 26394932 ~ 26395425 (-) True G14765
AMCG00016601 mRNA downstream 271882 25824746 ~ 25825846 (-) True AMCG00016601
AMCG00016599 mRNA downstream 371181 25706081 ~ 25726547 (-) True AMCG00016599
AMCG00016600 mRNA downstream 394401 25676569 ~ 25703327 (-) True AMCG00016600
AMCG00016597 mRNA downstream 455395 25611563 ~ 25642333 (-) True AMCG00016597
AMCG00016594 mRNA downstream 614018 25449909 ~ 25483710 (-) True AMCG00016594
AMCG00016614 mRNA upstream 5944 26104916 ~ 26117450 (-) True AMCG00016614
AMCG00016617 mRNA upstream 48538 26147510 ~ 26149543 (-) True AMCG00016617
AMCG00016615 mRNA upstream 52639 26151611 ~ 26155450 (-) True AMCG00016615
AMCG00016616 mRNA upstream 60054 26159026 ~ 26159922 (-) False AMCG00016616
AMCG00016624 mRNA upstream 113414 26212386 ~ 26215060 (-) True AMCG00016624
TU18183 other downstream 14561 26081503 ~ 26083167 (-) True G14637
TU18038 other downstream 343256 25752995 ~ 25754472 (-) True G14534
TU17858 other downstream 820250 25273664 ~ 25277478 (-) False AMCG00016579
TU17849 other downstream 1014029 25080568 ~ 25083699 (-) True G14392
TU17768 other downstream 1082385 25012364 ~ 25015343 (-) False AMCG00016562
TU18222 other upstream 57549 26156521 ~ 26159442 (-) True AMCG00016616
TU18225 other upstream 82772 26181744 ~ 26184778 (-) False G14676
TU18226 other upstream 82772 26181744 ~ 26184778 (-) True G14676
TU18278 other upstream 140110 26239082 ~ 26241106 (-) False AMCG00016623
TU18405 other upstream 328367 26427339 ~ 26518279 (-) False G14816

Expression Profile