RNA id: TU18347


Basic Information

Item Value
RNA id TU18347
length 219
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G14775
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26425032 ~ 26425250 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgaaacatttttaatatcaagCCTGCATCTCAGAAATACAGAAACCCACCCAACCAGATCCACtcctctctccatttctcccGATGCAGAATATCTGACAATGAGGTTTCCTTCTGATTTCTATAGGCAAGGAGCGGCGGTGCCCAAAACAACGGCACAGACTTGGGCTAGGAGAGGGATAAGCACAAGCCATTGGCAATAACGAAAATGAACAGGGA

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18337 lncRNA downstream 29607 26394932 ~ 26395425 (-) True G14765
TU18283 lncRNA downstream 121573 26275177 ~ 26303459 (-) True G14723
TU18227 lncRNA downstream 240254 26181744 ~ 26184778 (-) False G14676
TU18228 lncRNA downstream 240254 26181744 ~ 26184778 (-) False G14676
TU18219 lncRNA downstream 275948 26148305 ~ 26149084 (-) False AMCG00016617
TU18409 lncRNA upstream 2089 26427339 ~ 26518279 (-) False G14816
TU18415 lncRNA upstream 5205 26430455 ~ 26432353 (-) False G14818
TU18418 lncRNA upstream 5205 26430455 ~ 26468099 (-) True G14818
TU18414 lncRNA upstream 38532 26463782 ~ 26468099 (-) False G14818
TU18416 lncRNA upstream 41075 26466325 ~ 26468099 (-) False G14818
AMCG00016630 mRNA downstream 43303 26380048 ~ 26381729 (-) True AMCG00016630
AMCG00016627 mRNA downstream 50430 26373019 ~ 26374602 (-) True AMCG00016627
AMCG00016628 mRNA downstream 81418 26339493 ~ 26343614 (-) True AMCG00016628
AMCG00016629 mRNA downstream 115669 26304915 ~ 26309363 (-) True AMCG00016629
AMCG00016623 mRNA downstream 183642 26239082 ~ 26241390 (-) True AMCG00016623
AMCG00016634 mRNA upstream 16909 26442159 ~ 26446820 (-) True AMCG00016634
AMCG00016643 mRNA upstream 160146 26585396 ~ 26591527 (-) False AMCG00016643
AMCG00016644 mRNA upstream 201457 26626707 ~ 26643493 (-) True AMCG00016644
AMCG00016645 mRNA upstream 230338 26655588 ~ 26660740 (-) True AMCG00016645
AMCG00016642 mRNA upstream 236836 26662086 ~ 26664301 (-) True AMCG00016642
TU18278 other downstream 183926 26239082 ~ 26241106 (-) False AMCG00016623
TU18225 other downstream 240254 26181744 ~ 26184778 (-) False G14676
TU18226 other downstream 240254 26181744 ~ 26184778 (-) True G14676
TU18222 other downstream 265590 26156521 ~ 26159442 (-) True AMCG00016616
TU18183 other downstream 341865 26081503 ~ 26083167 (-) True G14637
TU18405 other upstream 2089 26427339 ~ 26518279 (-) False G14816
TU18407 other upstream 2089 26427339 ~ 26520397 (-) True G14816
TU18445 other upstream 143419 26568669 ~ 26571641 (-) True G14843
TU18448 other upstream 143419 26568669 ~ 26571641 (-) False G14843
TU18636 other upstream 843570 27268820 ~ 27279334 (-) True AMCG00016671

Expression Profile