RNA id: TU18673


Basic Information

Item Value
RNA id TU18673
length 550
RNA type TUCP
GC content 0.43
exon number 1
gene id G15026
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27369590 ~ 27370139 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggtggtGTCTGTCCTTGATGGTGCTGTCTGTGTGATGCTCCTCTCAGCTAACAcaggggtgtctgtgtgttcatCAGCCTTGAGGtcggagagatgagggtctgcagGCCCAGGAAGACGAAGAGTCACACTGACATCAAGGCCTGCTGGTTCTGTTCACTGCCTGTTGCAGACAGGACTGTGTACAGTGGACCCTGTCCTCGGGGACAGGCCGGGCTCTGTGGCCCTGATTGGGACAGCTCTGCGTCTCTGACAGACCGGCCCACACTGCGTAGCTTGCACCACCGCCCGTTGGCCAAAGAGGGGATTCTCAGCCACATACGATCCCATCAATACGGTCTGATTTTATTCTTCCTTAAAATACATATCAGCTTATTATATTCTATATCCttaaagtatataaatacatttttacaaatgaaaaaaaaaaatcctcaggTGGTTGGAAACTCGTATGTTGCTTCTCTGCTCGGGTTTTGGAAAGgggattaatatattttttacaaatctgtccatatagatttatataataaattctCATGACATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18659 lncRNA downstream 60632 27296085 ~ 27308958 (-) True G15016
TU18640 lncRNA downstream 103987 27263713 ~ 27265603 (-) True G15001
TU18637 lncRNA downstream 124343 27243966 ~ 27245247 (-) True G14999
TU18574 lncRNA downstream 365883 26995173 ~ 27003707 (-) False AMCG00016662
TU18569 lncRNA downstream 386104 26979158 ~ 26983486 (-) True G14943
TU18737 lncRNA upstream 24980 27395119 ~ 27398583 (-) True G15066
TU18742 lncRNA upstream 42861 27413000 ~ 27413229 (-) True G15071
TU18744 lncRNA upstream 45514 27415653 ~ 27415892 (-) True G15073
TU18745 lncRNA upstream 46110 27416249 ~ 27416539 (-) True G15074
TU18746 lncRNA upstream 54415 27424554 ~ 27424821 (-) True G15075
AMCG00016669 mRNA downstream 29997 27338007 ~ 27339593 (-) True AMCG00016669
AMCG00016672 mRNA downstream 56417 27299603 ~ 27313173 (-) True AMCG00016672
AMCG00016673 mRNA downstream 78729 27286874 ~ 27290861 (-) True AMCG00016673
AMCG00016674 mRNA downstream 83129 27286213 ~ 27286461 (-) True AMCG00016674
AMCG00016671 mRNA downstream 97565 27265887 ~ 27272025 (-) False AMCG00016671
AMCG00016670 mRNA upstream 840 27370979 ~ 27375700 (-) True AMCG00016670
AMCG00016675 mRNA upstream 5826 27375965 ~ 27381088 (-) True AMCG00016675
AMCG00016681 mRNA upstream 59963 27430102 ~ 27433860 (-) True AMCG00016681
AMCG00016688 mRNA upstream 139506 27509645 ~ 27516973 (-) True AMCG00016688
AMCG00016692 mRNA upstream 273500 27643639 ~ 27650849 (-) True AMCG00016692
TU18636 other downstream 90256 27268820 ~ 27279334 (-) True AMCG00016671
TU18445 other downstream 797949 26568669 ~ 26571641 (-) True G14843
TU18448 other downstream 797949 26568669 ~ 26571641 (-) False G14843
TU18407 other downstream 849193 26427339 ~ 26520397 (-) True G14816
TU18405 other downstream 851311 26427339 ~ 26518279 (-) False G14816
TU18738 other upstream 31537 27401676 ~ 27403922 (-) True G15067
TU18749 other upstream 54754 27424893 ~ 27428651 (-) True G15076
TU19143 other upstream 1411333 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 2831320 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 3156153 30526292 ~ 30529500 (-) True G15787

Expression Profile