RNA id: TU19936


Basic Information

Item Value
RNA id TU19936
length 432
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id G16043
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31718900 ~ 31720036 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATTACAGGAGAAAATTCAGCAAATGTCTGTTCTGTACATGTGGTGGGAGGCGGTAGTGGGGGTATATATTTCACCTCTCTCTTGCCACAACCTTCTTTATAAAGTAGATGCTTTATAAACTCAGCGTTCACTAGCAGCTTGGCCATCCTGCACACCAACGATGGAGCTACAGAACACATGCAGTGGACTGCAGAAAACTGCAGAAGATGATATATACACAACTTTACACCAATCCACAGCTGCTGTGAAGAGCATGGACAGCACCTTATGTTACTATCGAGTGGCTGTTTTGCTGCTCTCCATCCTGTGTGGTCTCCTACTGGGTGCCACTACAGTGCTAGGAGCTCTGTaTGTATTCCAGTCTGATTTGATTAGTGAATTGCAGAGGGAAAAACAGGACTGGATATCATCCACATTCCCCTGTTCTAAAG

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19910 lncRNA downstream 19500 31699136 ~ 31699400 (-) True G16026
TU19907 lncRNA downstream 21292 31693816 ~ 31697608 (-) True G16024
TU19880 lncRNA downstream 103687 31604606 ~ 31615213 (-) True G16004
TU19851 lncRNA downstream 190279 31528050 ~ 31528621 (-) True G15985
TU19848 lncRNA downstream 214352 31504079 ~ 31504548 (-) True G15982
TU19968 lncRNA upstream 49694 31769730 ~ 31771274 (-) False G16069
TU19969 lncRNA upstream 50639 31770675 ~ 31771274 (-) True G16069
TU20077 lncRNA upstream 485687 32205723 ~ 32206877 (-) True G16154
TU20076 lncRNA upstream 486926 32206962 ~ 32208117 (-) True G16153
TU20119 lncRNA upstream 541513 32261549 ~ 32262666 (-) True AMCG00016847
AMCG00016824 mRNA downstream 44404 31658248 ~ 31674496 (-) True AMCG00016824
AMCG00016823 mRNA downstream 64967 31643856 ~ 31653933 (-) True AMCG00016823
AMCG00016816 mRNA downstream 314956 31400817 ~ 31403944 (-) True AMCG00016816
AMCG00016815 mRNA downstream 330632 31380646 ~ 31388268 (-) True AMCG00016815
AMCG00016811 mRNA downstream 381620 31336445 ~ 31337280 (-) True AMCG00016811
AMCG00016831 mRNA upstream 35499 31755535 ~ 31762700 (-) True AMCG00016831
AMCG00016833 mRNA upstream 57376 31777412 ~ 31801252 (-) True AMCG00016833
AMCG00016835 mRNA upstream 83001 31803037 ~ 31818127 (-) True AMCG00016835
AMCG00016834 mRNA upstream 119795 31839831 ~ 31844052 (-) True AMCG00016834
AMCG00016838 mRNA upstream 124426 31844462 ~ 31852119 (-) True AMCG00016838
TU19613 other downstream 1189400 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 1516549 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 2933393 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 4290249 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 4314978 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 703022 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 777471 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 777471 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 1456040 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 1706452 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile