RNA id: TU20181


Basic Information

Item Value
RNA id TU20181
length 239
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G16244
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32393142 ~ 32393380 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCAAGCAATGCTGAAAACCTAGTAAAATGAATAGGCTGGAGCTCAGGATTTTGTAATGCATCCTTTAAGGGAAGGTTGGCGTTCTTCTGGGGTTTTTAAGCTGTCAACAAATTCTCTGCAACTATTTTCTAATTTCCTTCGACCACGACAGcatccttttttccccccttttcccCCAACTTTAACACGCTCTGCTACAACTCTGCTTCCCAATCTTCCCAATCACACGACTGTCCC

Function

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20119 lncRNA downstream 130476 32261549 ~ 32262666 (-) True AMCG00016847
TU20076 lncRNA downstream 185025 32206962 ~ 32208117 (-) True G16153
TU20077 lncRNA downstream 186265 32205723 ~ 32206877 (-) True G16154
TU19968 lncRNA downstream 621868 31769730 ~ 31771274 (-) False G16069
TU19969 lncRNA downstream 621868 31770675 ~ 31771274 (-) True G16069
TU20182 lncRNA upstream 22811 32416191 ~ 32416444 (-) True G16245
TU20185 lncRNA upstream 32336 32425716 ~ 32425956 (-) True G16248
TU20186 lncRNA upstream 34472 32427852 ~ 32428080 (-) True G16249
TU20187 lncRNA upstream 40856 32434236 ~ 32436683 (-) True G16250
TU20246 lncRNA upstream 461401 32854781 ~ 32857465 (-) True G16292
AMCG00016850 mRNA downstream 9947 32382683 ~ 32383195 (-) True AMCG00016850
AMCG00016849 mRNA downstream 67981 32304650 ~ 32325161 (-) True AMCG00016849
AMCG00016846 mRNA downstream 109102 32269963 ~ 32284040 (-) True AMCG00016846
AMCG00016847 mRNA downstream 125174 32261928 ~ 32267968 (-) False AMCG00016847
AMCG00016837 mRNA downstream 390607 31979211 ~ 32002535 (-) True AMCG00016837
AMCG00016856 mRNA upstream 44856 32438236 ~ 32469626 (-) True AMCG00016856
AMCG00016860 mRNA upstream 76515 32469895 ~ 32470107 (-) True AMCG00016860
AMCG00016859 mRNA upstream 109185 32502565 ~ 32507319 (-) False AMCG00016859
AMCG00016858 mRNA upstream 114969 32508349 ~ 32533759 (-) True AMCG00016858
AMCG00016857 mRNA upstream 152239 32545619 ~ 32546814 (-) True AMCG00016857
TU19613 other downstream 1863642 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2190791 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 3607635 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 4964491 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 4989220 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 29678 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 104127 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 104127 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 782696 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 1033108 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile