RNA id: TU20699



Basic Information


Item Value
RNA id TU20699
length 213
lncRNA type intronic
GC content 0.45
exon number 1
gene id G16668
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34736337 ~ 34736549 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cccacaagagctgcagttttggagatgctctgatccagtcgtctagccatcacaatttggcccttgtcaaagtcgctcagatccttacgcttgcccatttttcctgcttctaacacatcaactttgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataatgagattatcagtgttattcacttcacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU20676 lncRNA upstream 136420 34597822 ~ 34599917 (+) True G16646
TU20560 lncRNA upstream 630650 34104456 ~ 34105687 (+) True G16552
TU20553 lncRNA upstream 636741 34093276 ~ 34099596 (+) True AMCG00016909
TU20554 lncRNA upstream 637945 34093276 ~ 34098392 (+) False AMCG00016909
TU20546 lncRNA upstream 740955 33993182 ~ 33995382 (+) True G16542
TU20725 lncRNA downstream 39276 34775825 ~ 34777047 (+) True G16692
TU20731 lncRNA downstream 84648 34821197 ~ 34821413 (+) True G16698
TU20745 lncRNA downstream 354910 35091459 ~ 35094092 (+) True G16705
TU20782 lncRNA downstream 447786 35184335 ~ 35234875 (+) True G16728
TU20772 lncRNA downstream 464596 35201145 ~ 35204232 (+) False AMCG00016934
AMCG00016924 mRNA upstream 8954 34708297 ~ 34727383 (+) True AMCG00016924
AMCG00016920 mRNA upstream 37932 34679512 ~ 34698405 (+) True AMCG00016920
AMCG00016921 mRNA upstream 75873 34657711 ~ 34660464 (+) True AMCG00016921
AMCG00016919 mRNA upstream 121481 34611643 ~ 34614856 (+) True AMCG00016919
AMCG00016918 mRNA upstream 138758 34558539 ~ 34597579 (+) True AMCG00016918
AMCG00016923 mRNA downstream 24943 34761492 ~ 34773639 (+) True AMCG00016923
AMCG00016925 mRNA downstream 187641 34924190 ~ 34927331 (+) True AMCG00016925
AMCG00016926 mRNA downstream 273816 35010365 ~ 35014666 (+) True AMCG00016926
AMCG00016927 mRNA downstream 297266 35033815 ~ 35081248 (+) True AMCG00016927
AMCG00016928 mRNA downstream 361041 35097590 ~ 35116668 (+) True AMCG00016928
TU20555 other upstream 635474 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 688617 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 1063717 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 1878897 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 2233081 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 3759502 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 7654748 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 9389665 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 9918103 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 14666170 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile