RNA id: TU20876


Basic Information

Item Value
RNA id TU20876
length 2155
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G16814
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35399828 ~ 35449171 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTTTTTCAACATAAATGAAGCAAGTCACTATAATACTATTTTACTAATCAAATAAACTAGCCATGCAAATGACAGCTAGTAATATTCTGAGCAGCACTCGCCACTATAGCTGTGCCCATGTGCAGGGGGACCAAAGGAAGAACAAGAGGGCTACTgggtaaaaatgtaattttattgaaTTTGGAGAATCAGACAGTACAGGTCTAAGTGCTGTGACACGTTAACCTTTTTAAGTTGTAGGAATCATGtgtaccaaaaaataaaaacaaacaataacatgaCTTAAAGAtggaatgcattttttattttttatatatatttataacagaaggaaaaatgtaaaaaaaattaagacattAGCACAAATGAAGCAAACTGATCAATCAGTTTTTCATGGTTGGGAACTGAGTGAAGAAGCTGATGGAACAGGTCAAAGGCATATGGGCTGTGTGTCAGGGGATGACAGAACATCAGAAGGTGGGGCGTGGAGGGGGTaaggcagagtgggagggggtTCCAGAGTGCCCCCCCACACCACTGGAAAACAAGACAAAGGCATCATGAAAGCAAGGCCCTGCCCATACTGAGACTAGGAAAAGAACAAGAGAAAATGCAGAACTGGGTGCTTTACAGACAATGAAGGTGCCAATGTCTCAAGTACTATCCCAGCCGCTACACCAGGACTCTCCAGTGTGGGCTGAAAGGCATTGGCGTCTCTCCCTCAATGCCACTCTGCTCTCAGCTCTTGCCAGGACTTAAGATACCCTTTTTTCTAGAACTCAAACACAAACATCCAGTCCATTCTCAAAGTTTATTTCCACTGATAACAATTTAATCCCAGCTCCATCACAATCTCCCTGGCCCAGAGAGGCAGAATTCAGCACTAAACTGCTGCCTTGTAAAGGCCAGACCAAATTGCACACTGCTCTATGCTGTAGAGCTACCAACTGTCTGGAAATCTATTACACTCCACATGGCTCCACACCCTGGAACCTCTATTCTCAATCACCTCTCACACATGTCCAGTTTGCACCTAAAAAACAGGCGCTTCGAAAATGCACTATGATGCAGAGTCCAACCACTAATGAAGTcgagttataataataatgacacctacactgttttcatgaaatacatTAACAAGTCGCCCCATCATGTAACCCAACCCTCTCTCCCAACCACTGTGACATCAGTGGCTCAAAGACCGTAACCTACAAAACAACAGCACTTTCAATGCAGTCTTTCCTGGATGTGGGTACCAGCAGGGGTGTTACTGTGAGGTGATCCTGAGGTTGGCGGGTTGGCGAAAACCCTCCAATAATGCACTGTGTGATTCTCATTCAGGGAAGGAGAAAGGTGTCAAAGGGTTTGATACACCAGGCAGTTTTCCGATAACACTGGAACACAATACACTGGGTACATGGACACAGACGGTGTTGGAAACCATTTGGACACATCATTTACAAAGGGACGATACACTCGTCAGGTACAGAGGACAAACTCCAGCTTGCAGCCACGATCTCTGATCAGGGCTGCGACCTAGCATGTCCCCCTTGGCCTTGGCCTACAGAGCTTAGTTACAAAACCACCACCTTCAGAAGCAGTAGCATCCAAAGAATATTATTTAACAGCAATCAGGTCTCATTTCATTTAGGTATAAGTGATTATTTGGGGGAGGAGATGCTGATCATAATAATTTGAAGACCTGTGAATATGTTGTATTGTCATTAGGAATAAAAGCTGTGCTGATTAATTCAGACTGCAGCTGTGGGATCTGGCTGTCAAGACAGCTCTCTGGAATAGAGCGGATTTACATAGACCTGCACTTCCAAGCCAGACCAAATAGAACTCACAAATGAAGCCCCTCAACACACCACAGCATGACCACACCTGCGTCTGTTTTGGATTGAAGTACTTCTAATTATAGCACGCATTTCTCAAAACCTTATTCCTTTTTCATATCCCATTtagacatttaataatttaagaaaagtATGACCGTTTTCTGCTTTCATAGCAGGAAATGAAGAACAATTTCCTTTTACCTTTTGTCTCCTTGCCATTTTAGTCACAGTGCAGTATTAAATCACAGGCAAGGGTTAATGGAATATgccacatacatacatatatatatatatatatatatatataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20867 lncRNA upstream 18045 35381497 ~ 35381783 (+) True G16806
TU20848 lncRNA upstream 47908 35351577 ~ 35351920 (+) True G16788
TU20844 lncRNA upstream 93103 35306489 ~ 35306725 (+) True G16784
TU20839 lncRNA upstream 117068 35282171 ~ 35282760 (+) True G16779
TU20838 lncRNA upstream 120760 35278829 ~ 35279068 (+) True G16778
TU20933 lncRNA downstream 449036 35898207 ~ 35898516 (+) True G16863
TU21047 lncRNA downstream 1232168 36681339 ~ 36681552 (+) True G16969
TU21063 lncRNA downstream 1523893 36973064 ~ 36973283 (+) True G16984
TU21071 lncRNA downstream 1798257 37247428 ~ 37303443 (+) True G16990
TU21081 lncRNA downstream 1964943 37414114 ~ 37418490 (+) True G16998
AMCG00016935 mRNA upstream 139348 35247507 ~ 35260480 (+) True AMCG00016935
AMCG00016933 mRNA upstream 167299 35220562 ~ 35232529 (+) True AMCG00016933
AMCG00016932 mRNA upstream 187215 35205880 ~ 35212613 (+) True AMCG00016932
AMCG00016934 mRNA upstream 195598 35158597 ~ 35204230 (+) True AMCG00016934
AMCG00016929 mRNA upstream 258039 35137549 ~ 35141789 (+) True AMCG00016929
AMCG00016941 mRNA downstream 104051 35553222 ~ 35555196 (+) True AMCG00016941
AMCG00016943 mRNA downstream 174179 35623350 ~ 35623650 (+) True AMCG00016943
AMCG00016945 mRNA downstream 325905 35775076 ~ 35785159 (+) True AMCG00016945
AMCG00016946 mRNA downstream 353977 35803148 ~ 35848748 (+) True AMCG00016946
AMCG00016948 mRNA downstream 653195 36102366 ~ 36202202 (+) True AMCG00016948
TU20555 other upstream 1298965 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 1352108 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 1727208 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 2542388 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 2896572 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 3046880 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 6942126 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 8677043 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 9205481 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 13953548 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile