RNA id: TU21047



Basic Information


Item Value
RNA id TU21047
length 214
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G16969
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 36681339 ~ 36681552 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ttttattatgcttcttgcattcttgattgttttcctccttgctccctttcccgtggcccttgactgtgaccctacctcttgacagcacttagcttttactgtccaggatgtatgacctcacttattgtacttagctgtgtaaattggaagttgtaaaatgtattatattttgaattgctatgtttaatgtaaatttgaatttgtaatgtttgat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU20933 lncRNA upstream 782823 35898207 ~ 35898516 (+) True G16863
TU20876 lncRNA upstream 1232168 35399828 ~ 35449171 (+) True G16814
TU20867 lncRNA upstream 1299556 35381497 ~ 35381783 (+) True G16806
TU20848 lncRNA upstream 1329419 35351577 ~ 35351920 (+) True G16788
TU20844 lncRNA upstream 1374614 35306489 ~ 35306725 (+) True G16784
TU21063 lncRNA downstream 291512 36973064 ~ 36973283 (+) True G16984
TU21071 lncRNA downstream 565876 37247428 ~ 37303443 (+) True G16990
TU21081 lncRNA downstream 732562 37414114 ~ 37418490 (+) True G16998
TU21083 lncRNA downstream 732562 37414114 ~ 37414819 (+) False G16998
TU21082 lncRNA downstream 733419 37414971 ~ 37418490 (+) False G16998
AMCG00016951 mRNA upstream 121358 36533936 ~ 36559981 (+) True AMCG00016951
AMCG00016950 mRNA upstream 156708 36501049 ~ 36524631 (+) True AMCG00016950
AMCG00016949 mRNA upstream 379446 36299372 ~ 36301893 (+) True AMCG00016949
AMCG00016947 mRNA upstream 429124 36241389 ~ 36252215 (+) True AMCG00016947
AMCG00016948 mRNA upstream 479137 36102366 ~ 36202202 (+) True AMCG00016948
AMCG00016960 mRNA downstream 1403738 38085290 ~ 38087536 (+) True AMCG00016960
AMCG00016966 mRNA downstream 1640413 38321965 ~ 38336646 (+) True AMCG00016966
AMCG00016965 mRNA downstream 1656093 38337645 ~ 38351463 (+) True AMCG00016965
AMCG00016970 mRNA downstream 1714147 38395699 ~ 38399287 (+) True AMCG00016970
AMCG00016972 mRNA downstream 1719178 38400730 ~ 38415204 (+) True AMCG00016972
TU20555 other upstream 2580476 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 2633619 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 3008719 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 3823899 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 4178083 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 1814499 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 5709745 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 7444662 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 7973100 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 12721167 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile