RNA id: TU21085


Basic Information

Item Value
RNA id TU21085
length 3734
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G16998
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 37414114 ~ 37418704 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taaaaaacaacaatggaaaaacataaaaaaaaaaaaaaaaacctcctgAGACTttgaaaattacaatatatccAGCGGTTTTACAATCTTCAAAGACTATCCTGCATAGTGATAGGCTGCTACATATTAAGTAGATTGAACTTGTGCCTGCTAAAGCCATTAGCAGTACAATCTGTTAAATGGTGTATTACTGgtaatattactactacataGGCCACACTAATCAAAAATTGGATGACCACCAATGATCAAGTAGGGCAatggtgttgaaaatgtattaatacccTAAAACCAAATAACTAACACTGATATCCTGCACCACACTGTAGTCTGAGAAACAGAGGAAAAAGTTTTAAAGACTTTAGACAAAACCTTATGGAACTCACCATCCTTAAATGcacttgcttaaaaaaaaacccaTGGCTCAGTGAATCTGAAAATGCCCtgaactatataaatataattcccTATACACCCTCCTGAAACATGGTACACAAACCCCACCCTGTGGGTAAGAAGAACTATAGTTGATCTTCATCCAGGCTACTACTGGATTCAGAGGACAGTGATCCATAGTTAATTAAATGTGGTAAAACAATCTGTTTGGAAATGTGTCCCCTATTATGCCTGTTTGAAGTTCTGGTTGAATCCTAATGTGTAAAAGTCTATCACTAGCAGATTATGGCACTCATTCAGCTATTCCCAAAATAAACTGATGTCCAGTACGTTTTGATGTAAACCTCTTGCAGTTCCAGTCAGAGATGATTGGTCCAAATACACTCATAGGGTGTTACACCTTGGGGAGGGGGGCGTGATTTCTGTTTAAAAGTGTCCCAGTACTTGAGTGACCTTGTTGAAAAACCGGACAGTTTAGTTTCTCAACACTGTAACAGCAGGAGTCTTTATGTGCAGTAACAAATTTTAAGGAAAACATATACATAGTTTCTCATTTGTTTGTCATGGAAGCCGGCTCCCCCCACAAGCTTTTAGAGAAAGATGCAACACAAAGGTTCTTCCACATAATGCAAAACACCTTATAGGAAAAGAGGTGTGAAAGCTCATGAGAAGCAGTCCATACTGAATTATATAAAGTTTGTAAGTGTCACTTTTGCAGTTTGCTCTCCCTTGTATGATTAATTTTGTGACCTTGGCAAAATTAGGTCTTGCAACCTACCTGAACTGCAAATAAGGTAGGTGCCATCTTGCTTTCTGCTGAGAAACTGAATGCTTCCCCAACACGAATGAGAGTGTAAACCATGCTGTAGCAAAAGGTATTTTAGTCAtagactttttttaaaacaaaattctctaAACAAGCACAGACATAATTAAGCGGCAATTGTCACACAAGGCTAAGATTTCTATTGGTCTTCATTCCCACTTCACAGCTGTGAAATACCGGCtttataaaatactgtacagtacacCAGCAATGCAAGTCAATCATTTTCTATGACCTCGGAGGAACTGGCTTCCATGATCAATtagtggggaaaaacaaaaaaaacaaaaacaaaaaaaaaacagcttcgATTCTggggagaaaaagcaaaaattaaacaaaacaaaatattctaAAACTACTACTGACCACAGGTCACTTCAGGCAAGAAGGAAACCAGTTTACACATTTCTCACCACAACGTCAAACTTTCAGAGTTTTCACAAAAAAgtccaaacacacaaaaatgacaGTCTTCTGTTTACTCAGGTCACGGGGCTAAAGGGATTATTTAGTCTTGGCCTACTAATgacttgtgtatatatatattttttctccttcgCCTCAAAGCTAACCCTCTTTCTTAGATCTTTACTGCCTCCaatcaaaaaactaaatatgctCTGCATCCTAATCtgcataataatatttaaagtaagCCCGGTGCTGTGTGATTTTCTCCTTCGTTCTAGTACAAGCTAAATGTTCTTGGTAATCTCActatgatgtattttttgttgggTGGGGGAGAAAAGGGCTGGTTCATTTCCATTGGTAGGATAGGATTTAAGATGAGGGAAAGCGAGAAACAtttcatgtgtttttgaaatttaTCAAAGGAATAGCCTCTCGTAAACAGATGAACAGCCCTTCAAATGGGTCCTACTCTTTTGCTTCTGCCCAAACTGCTAAAGAAAGGAGTGTCtgttgatatttaaaatgttccgTACCAGACCAAAAACAGCATTTCCATGCATTCTCGACCAGCAAGTGCAGAACCATCTCTTCAATAATGTACTTCATTTACCAATAACTGTGCAATTGGAAATGCATGTCCGATGTTTTATAGGCATTTTGCAGATATTAACTTAAAACGGCAATAACACTCAGTATTCACCAAGAGTGCTGTTCTGAGAGATATCGCAATGTTAACTACAATTATTCTGTTTTCCAGCGGAAAGGATGGATGCTTAGCAACCACAACACTCGTTTCTACAAACTATTTTTGGGTCCGTTTTAAAACGCCACTGGATGTaatctggaaagaaaataaatgcctcAAAAGCTGCAGCTCCTTCTTGcttttgcaataaaacaaaaaaggatttGCATGTGATGAGTGAAGagttgcaaataaaaaatatacagtacttaTTTACTTCAAAAAAACCCATCAAAAAGACTGTGTGCCTTATAAGATTTCTTCTTTCTGCTtccattttttgctttttcatttttttttcattttaataacttcAGTCACTCGGcatgttaacatttaaattatagcaCATTTTATCATCtaaaaaaatgtctttgcactaaacaacattcaaataaaacatggcacaggacgagtatttttttttctttttgtttttgtcagaaaTATCAAAGCTTATGGAACTCATTTCATAACAGAACCCATTTCATAATATCGATTTAATCTTTTcagttaaaattgaaaaaaaaaaaaatcttttaagcttttaatttattttatcatctttAAAAActcaattgtattttgtttgttttttaatgtaatttcctgTAAATTGTGCAAATTTAGCAGTAACACTAGTGGCAGGTAGCCGGAGAGTGGGCAGTcaagtatatttaaaacaacaacaacaacgacaacaacaacaaaagcaaaaaaaaaacaaaaacacaaaagtccCTTGAGGTTAATAATGTCCCATCCAGGCTTCATCGTGTGGCAGATTATCTTGTGACCAGAGGAACGGTTCCCAAAGCCATGAAGTTGCCATGtctcagttgtttttttgttgtttattctcCTTGGTTCttcattgattgtttttttattgtctgtgaaaagatatcttaaaataaaacaaaagaccaaaacaaaaataatgatttaaatgctCGTAATGGAGACAGGCTACACATGCCCAGTCCTGCGGGATCCACAGTGCACTGCTTTTGTATTCTCAGTTTTTAGTCTGTGTTCAGAATGACGCTCAGGCCAACAAGATACTGGTCTTTCAACTGGCAAGGGCCATGGTGTCGATGACTTGTTCCAGCTTACACCGCAGTCTCTGTCTTCTGGCTTGTTCATCTTTTTCTAAAGCAGACAATATCTGAGAGATGAGGAGAGaaagtgggggggaggggagacaTAACAGGTTAAGTTAATCTTTTTATGATTgattttatcatatttaaagCATCTACAAATGAGCATGAGAAAGTAAATGTCTACCCATTTTAGTATTTGGGTGAGTCTTcttttgcataaaaataaatgtagatttCAAAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21083 lncRNA upstream 152 37414114 ~ 37414819 (+) False G16998
TU21071 lncRNA upstream 111528 37247428 ~ 37303443 (+) True G16990
TU21063 lncRNA upstream 441688 36973064 ~ 36973283 (+) True G16984
TU21047 lncRNA upstream 733419 36681339 ~ 36681552 (+) True G16969
TU20933 lncRNA upstream 1516455 35898207 ~ 35898516 (+) True G16863
TU21086 lncRNA downstream 5783 37424487 ~ 37424697 (+) True G16999
TU21087 lncRNA downstream 6962 37425666 ~ 37425871 (+) True G17000
TU21088 lncRNA downstream 7843 37426547 ~ 37426788 (+) True G17001
TU21089 lncRNA downstream 10449 37429153 ~ 37429396 (+) True G17002
TU21090 lncRNA downstream 15654 37434358 ~ 37434868 (+) True G17003
AMCG00016951 mRNA upstream 854990 36533936 ~ 36559981 (+) True AMCG00016951
AMCG00016950 mRNA upstream 890340 36501049 ~ 36524631 (+) True AMCG00016950
AMCG00016949 mRNA upstream 1113078 36299372 ~ 36301893 (+) True AMCG00016949
AMCG00016947 mRNA upstream 1162756 36241389 ~ 36252215 (+) True AMCG00016947
AMCG00016948 mRNA upstream 1212769 36102366 ~ 36202202 (+) True AMCG00016948
AMCG00016960 mRNA downstream 666586 38085290 ~ 38087536 (+) True AMCG00016960
AMCG00016966 mRNA downstream 903261 38321965 ~ 38336646 (+) True AMCG00016966
AMCG00016965 mRNA downstream 918941 38337645 ~ 38351463 (+) True AMCG00016965
AMCG00016970 mRNA downstream 976995 38395699 ~ 38399287 (+) True AMCG00016970
AMCG00016972 mRNA downstream 982026 38400730 ~ 38415204 (+) True AMCG00016972
TU20555 other upstream 3314108 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 3367251 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 3742351 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 4557531 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 4911715 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 1077347 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 4972593 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 6707510 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 7235948 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 11984015 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU390667 True 1464 lncRNA 0.39 2 CI01000130 460362 ~ 463250 (-)