RNA id: TU21120


Basic Information

Item Value
RNA id TU21120
length 441
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G17033
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 37815577 ~ 37816017 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgaaggagaaaataaaacataaaaatactattagaatgagttttacaaaccagaaataaaaaattaaatgttgaaaattgaattagagctaatttttgaaatgggaatctgaggaaacagtGAAATTTGGTGAagatatgaatacatagataaccagatactccaggaaattaaaggtgtggtcatttggtagctgtgagttccacaatgaagagtttttgaAATCCCCAGATATAAGATCCCTAAATACAAGGTGTAGGTAAGAAAtgaactattgatcagttcaatctggctttgggaacagttcttctgaacctGTACCGGTGTAGATTGGACTTAAATAGGAGGAagtgacacaataaagacatatatGAGCCACTCAGGCGGACAGTCTTAGTGCCCAAGCAGGCTCTTCATTGGTGAAATCATTGACTgaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21108 lncRNA downstream 400767 37414114 ~ 37414810 (-) True G17021
TU21073 lncRNA downstream 478467 37241759 ~ 37337110 (-) False G16992
TU21075 lncRNA downstream 559786 37241759 ~ 37255791 (-) False G16992
TU21074 lncRNA downstream 566974 37241759 ~ 37248603 (-) True G16992
TU21067 lncRNA downstream 619499 37195762 ~ 37196078 (-) True G16988
TU21126 lncRNA upstream 42307 37858324 ~ 37858524 (-) True G17039
TU21147 lncRNA upstream 59233 37875250 ~ 37968168 (-) True AMCG00016959
TU21193 lncRNA upstream 273662 38089679 ~ 38117255 (-) True G17094
TU21253 lncRNA upstream 509233 38325250 ~ 38326037 (-) True G17140
TU21261 lncRNA upstream 523558 38339575 ~ 38339875 (-) True G17148
AMCG00016956 mRNA downstream 127342 37687015 ~ 37688235 (-) True AMCG00016956
AMCG00016957 mRNA downstream 246072 37535873 ~ 37569505 (-) True AMCG00016957
AMCG00016955 mRNA downstream 316416 37418427 ~ 37499161 (-) True AMCG00016955
AMCG00016954 mRNA downstream 1113595 36682750 ~ 36701982 (-) True AMCG00016954
AMCG00016953 mRNA downstream 1245566 36566281 ~ 36570011 (-) True AMCG00016953
AMCG00016959 mRNA upstream 238656 38054673 ~ 38058800 (-) False AMCG00016959
AMCG00016958 mRNA upstream 246056 38062073 ~ 38071943 (-) True AMCG00016958
AMCG00016964 mRNA upstream 276032 38092049 ~ 38114746 (-) True AMCG00016964
AMCG00016963 mRNA upstream 325744 38141761 ~ 38146133 (-) True AMCG00016963
AMCG00016962 mRNA upstream 333488 38149505 ~ 38163660 (-) True AMCG00016962
TU21119 other downstream 57106 37758157 ~ 37758471 (-) True G17032
TU20574 other downstream 3707636 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 4301998 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 4384492 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 4636694 33176076 ~ 33178883 (-) True G16356
TU21144 other upstream 211466 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 238648 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 3400634 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 4992694 42808711 ~ 42864616 (-) True G17842
TU23267 other upstream 10673110 48489127 ~ 48494349 (-) True AMCG00017158

Expression Profile