RNA id: TU21126


Basic Information

Item Value
RNA id TU21126
length 201
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G17039
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 37858324 ~ 37858524 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACtatctctgcctcctctccactctccttcctccagagccgctccttctcatccctggcccctaagtggtggaacgacctgcccaccgaagtcaaaacagcagagtccttgacctcattccggcacttactcaagacgcatctcttccgacagcacttgtaatgttagtcctctatccctgctagatagcacttcagctt

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21120 lncRNA downstream 42307 37815577 ~ 37816017 (-) True G17033
TU21108 lncRNA downstream 443514 37414114 ~ 37414810 (-) True G17021
TU21073 lncRNA downstream 521214 37241759 ~ 37337110 (-) False G16992
TU21075 lncRNA downstream 602533 37241759 ~ 37255791 (-) False G16992
TU21074 lncRNA downstream 609721 37241759 ~ 37248603 (-) True G16992
TU21147 lncRNA upstream 16726 37875250 ~ 37968168 (-) True AMCG00016959
TU21193 lncRNA upstream 231155 38089679 ~ 38117255 (-) True G17094
TU21253 lncRNA upstream 466726 38325250 ~ 38326037 (-) True G17140
TU21261 lncRNA upstream 481051 38339575 ~ 38339875 (-) True G17148
TU21262 lncRNA upstream 481859 38340383 ~ 38340835 (-) True G17149
AMCG00016956 mRNA downstream 170089 37687015 ~ 37688235 (-) True AMCG00016956
AMCG00016957 mRNA downstream 288819 37535873 ~ 37569505 (-) True AMCG00016957
AMCG00016955 mRNA downstream 359163 37418427 ~ 37499161 (-) True AMCG00016955
AMCG00016954 mRNA downstream 1156342 36682750 ~ 36701982 (-) True AMCG00016954
AMCG00016953 mRNA downstream 1288313 36566281 ~ 36570011 (-) True AMCG00016953
AMCG00016959 mRNA upstream 196149 38054673 ~ 38058800 (-) False AMCG00016959
AMCG00016958 mRNA upstream 203549 38062073 ~ 38071943 (-) True AMCG00016958
AMCG00016964 mRNA upstream 233525 38092049 ~ 38114746 (-) True AMCG00016964
AMCG00016963 mRNA upstream 283237 38141761 ~ 38146133 (-) True AMCG00016963
AMCG00016962 mRNA upstream 290981 38149505 ~ 38163660 (-) True AMCG00016962
TU21119 other downstream 99853 37758157 ~ 37758471 (-) True G17032
TU20574 other downstream 3750383 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 4344745 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 4427239 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 4679441 33176076 ~ 33178883 (-) True G16356
TU21144 other upstream 168959 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 196141 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 3358127 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 4950187 42808711 ~ 42864616 (-) True G17842
TU23267 other upstream 10630603 48489127 ~ 48494349 (-) True AMCG00017158

Expression Profile