RNA id: TU21281


Basic Information

Item Value
RNA id TU21281
length 341
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G17164
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38385821 ~ 38386161 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTCTGGAGcgatacacaaagcttaaattcatacatgggttacacaatcttgctgcaacaatgaCGTGAATATATTGGATATTAACACGGCACTGTCCCGCATCAATAGTTTAATAAGTGTGTTAGAGCAAGTGTGCTGAGCTATACAGGATgttgcattaaatacatttgggaATGCCACGTTCAGCTAcacagttatttattatgtatttcttagcagacacccttatccagggcggcTAGCAAAACATAAGTGCATTAAAGAAGTGCAATagtctaaaattacagatcaaaacatagcacaaattagatgttcaaaattacataactgtatattatt

Function

GO:

id name namespace
GO:0030031 cell projection assembly biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21262 lncRNA downstream 44986 38340383 ~ 38340835 (-) True G17149
TU21261 lncRNA downstream 45946 38339575 ~ 38339875 (-) True G17148
TU21253 lncRNA downstream 59784 38325250 ~ 38326037 (-) True G17140
TU21193 lncRNA downstream 268566 38089679 ~ 38117255 (-) True G17094
TU21147 lncRNA downstream 417653 37875250 ~ 37968168 (-) True AMCG00016959
TU21283 lncRNA upstream 5509 38391670 ~ 38392072 (-) True G17166
TU21288 lncRNA upstream 6920 38393081 ~ 38393320 (-) True G17170
TU21290 lncRNA upstream 8340 38394501 ~ 38395819 (-) True G17171
TU21356 lncRNA upstream 320923 38707084 ~ 38730835 (-) True G17225
TU21395 lncRNA upstream 350392 38736553 ~ 38803571 (-) True G17250
AMCG00016968 mRNA downstream 14571 38360534 ~ 38371250 (-) True AMCG00016968
AMCG00016967 mRNA downstream 165984 38182302 ~ 38219837 (-) True AMCG00016967
AMCG00016961 mRNA downstream 211497 38171152 ~ 38174324 (-) True AMCG00016961
AMCG00016962 mRNA downstream 222161 38149505 ~ 38163660 (-) True AMCG00016962
AMCG00016963 mRNA downstream 239688 38141761 ~ 38146133 (-) True AMCG00016963
AMCG00016969 mRNA upstream 119995 38506156 ~ 38513767 (-) True AMCG00016969
AMCG00016977 mRNA upstream 435947 38822108 ~ 38893519 (-) True AMCG00016977
AMCG00016978 mRNA upstream 832663 39218824 ~ 39237899 (-) True AMCG00016978
AMCG00016987 mRNA upstream 1441079 39827240 ~ 39855114 (-) True AMCG00016987
AMCG00016992 mRNA upstream 2502198 40888359 ~ 40888580 (-) True AMCG00016992
TU21144 other downstream 326882 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 326882 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 627350 37758157 ~ 37758471 (-) True G17032
TU20574 other downstream 4277880 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 4872242 33488725 ~ 33513579 (-) False AMCG00016891
TU21619 other upstream 2830490 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 4422550 42808711 ~ 42864616 (-) True G17842
TU23267 other upstream 10102966 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 13044694 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 13059426 51445587 ~ 51449786 (-) True G19335

Expression Profile