RNA id: TU21282


Basic Information

Item Value
RNA id TU21282
length 396
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G17165
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38391677 ~ 38392072 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttatagtttatttttgaaagtcactgagcaaATGACAATGGTCATTTATTTGACATGGAAATTTAGCATGGATGATGTACAAAAAGGCATGATAACCTAGAGGTTTACAAGCTATTTTATTCTCCAAAAACTGAGCAACAATggtaatttatttcacatggggatttgaaatgtaaatttagTGTGgatgctgtaaaaaaaaaaaaaaaaaaaaaaaggcatgatAGCCTAGAGGTTTCCAAAAACTGgtataacttttttattatttcatacaacaaaaaacaaacggGTCATTTTGTTTGGTCAAAATGGGCCCAAATGAAGAAATGGAGAAGGTCCCTAATGCCCAGAGTTCTCCATACAAGACTCACACTCCAGACTCATTTCTTTCCNNN

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0006518 peptide metabolic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21183 lncRNA upstream 255837 38135173 ~ 38135840 (+) True G17089
TU21167 lncRNA upstream 274422 38089801 ~ 38117255 (+) True G17073
TU21157 lncRNA upstream 298998 38062034 ~ 38092679 (+) True G17064
TU21131 lncRNA upstream 405020 37948232 ~ 37986657 (+) True G17044
TU21093 lncRNA upstream 936276 37455176 ~ 37455401 (+) True G17006
TU21343 lncRNA downstream 143989 38536061 ~ 38536333 (+) True G17214
TU21350 lncRNA downstream 233454 38625526 ~ 38626023 (+) True G17221
TU21363 lncRNA downstream 362449 38754521 ~ 38805946 (+) True G17230
TU21428 lncRNA downstream 687343 39079415 ~ 39079897 (+) True G17274
TU21437 lncRNA downstream 859428 39251500 ~ 39254490 (+) False AMCG00016979
AMCG00016965 mRNA upstream 40214 38337645 ~ 38351463 (+) True AMCG00016965
AMCG00016966 mRNA upstream 55031 38321965 ~ 38336646 (+) True AMCG00016966
AMCG00016960 mRNA upstream 304141 38085290 ~ 38087536 (+) True AMCG00016960
AMCG00016951 mRNA upstream 1831696 36533936 ~ 36559981 (+) True AMCG00016951
AMCG00016950 mRNA upstream 1867046 36501049 ~ 36524631 (+) True AMCG00016950
AMCG00016970 mRNA downstream 3627 38395699 ~ 38399287 (+) True AMCG00016970
AMCG00016972 mRNA downstream 8658 38400730 ~ 38415204 (+) True AMCG00016972
AMCG00016975 mRNA downstream 56536 38448608 ~ 38454664 (+) True AMCG00016975
AMCG00016974 mRNA downstream 76078 38468150 ~ 38471891 (+) True AMCG00016974
AMCG00016973 mRNA downstream 87260 38479332 ~ 38492044 (+) True AMCG00016973
TU20555 other upstream 4290814 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 4343957 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 4719057 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 5534237 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 5888421 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 103979 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 3999225 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 5734142 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 6262580 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 11010647 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile