RNA id: TU22862


Basic Information

Item Value
RNA id TU22862
length 2853
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G18430
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 46605530 ~ 46608382 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCTTCATTAtgtaatggtttattttcaagtaaaaacattgcaaatacaCAACTTTCTACAGCTTTGAGGCATTTATAGTAATAAATTCTGACATTTTCTCTTCacccaaaaaatatatttttacatttaattttaaagggaATGTGAAAGGAAGCATTTTTgtcaacacatttccaaaaaTTCCATGTATATTAtcgaaaagaaaagaaaaggtaaaactgaggattgaaaacaaagtttgtcattattttttcctGCACAAAACTAAGAAAATCTTATCAAAGATAATACTTcaataaaaagttaataataaaagcaataattatATTAGCTGTACAGAATTTACATCTAGAGAACAAATAACCCTTCCAGTTGTGGTAAAGTATACATTGTTCAGAATGAAAGGATCCTCTGCCTGTAAGACTCACTCGTTAGCATTGAAtagtggaaaaatatatatatttatctttttaaaaatatggtgTCTTCATACTTCCTGTGTAACTTCCATTCAATTATTGCAAAATATGGCCTTAAAGTAATATTCCAGGAAATCCAAGGTCAGCCTGCATAGCTGAAGAAAAGGAACCAACCaggaacacactcacacatgcacacacatgaacacacacatacaaaactaaacaaaatcctCGAAGCCCTTTCAGTCAAGGAACTTTGAAACATGAGAAAAATTCCTCCTTATGCTAATGTTTTGCATCTCTATCAGTTCAAAATGACATCAAAAaggtcatcatcatcatcatcatcatcatcatcataataataatactaaattatataaCACAATATGGCTCCATTGGTGTCTGTGTGCTCAGGCAGCAGGGAAAATGGGTTCTGAAACAAATCCTCAGCtctttgttaaatataaagCAGAGAATAGGATTCACTCCTGCTTGTGCAAATGTCATCCACACAGCAGCAGTCAGATAGACCTGTGGTATGGTACTTGCTTTCACAAACACGCGAAGGTAGCAGGCAACAATATAGGGTGACcaaaggagaaggaaaaggaggGTGATCATGTAAAACATCTTGCCGATTcgtttttccattttgaattccTCCAGGACCAGCAGCCTCTTATTGGAGTTGTGAGTAGCTTGTCTGATGCCCACTAATGTTGGTGGGGTGGGACCTCTTCCAAAACCTGCTATCCAGTTGGCAGCTGCTTGACCAGTGGCGCCTGGTCCATGGAACGTCCAGTTTTGACTTATTGCAGGAATCAGCTGAGCAGGTTTCATCTTGCGATGGTcgtaaacaaaaaacagcattttgatATAGACCACATGTGTGGTGCCCACTATGACTGCCAGCATCAACATGAAACCCAGGGTGTCATTTGCTTTCACATACCGATGCTCAAAAATGCACTGCTCTTCCTCCCTGATAAATTTGTAAGTGCCCACATCAAATACAGGCGGAAATGCCATGGCGACAGAAAGAGTCCAAACCATGCAGATGACAGCCACACAAGTCCATAGAGTCATTCTTTTGGAATAAAACCTGTGATGTGCAATTGCCATGTATCGGGTTACACTGATGCAGAATAGCATAAATGCGGCGTGGAAACAGAAGAGCACTGCCACAAAGGCTATGATCTTGCAGCTAATGATGCTGTAAGTCCAGCTGGAACCACTGCTGATAGATATCATCACAAAgggaaaacacacaacagatcTTATGATATCGGCCAGGCACAGATCCAAGAGAAAGTAATAAGGAGCCCGGTGCAAGGTCCTGTCTTTCAGTACGAGGAAACAAAGCAGCACATTTCCAGCTAGGCTAATACAGATGATCAAGCCGAGAGATGCCAGCTTCACTGCAGAAGCAGTAATGGCATAATTGTGAAGCGAGGTGTTGCTTTCTCCATGCTCACTTGCGTTCGCCATCTATGCAACCCAACAACTGACAACCTCTATCATCCCATTTAAAACAGAACTGGGTTTTAGTCCTTCAATGGAGtcataaacacataaacatcAGTGAGGAGGCTTACACTACCTTAAGCACTTACAAATGTATGCTtctcaaaatatacaaatccaTTGCATTACAAAATCCGAGTCCAGCGCATTGTTTCATTTGCTCCCGACCAGCgatttctcctcttctcttcccatcacaTCGTGCGATTCAGTCAACATTGCCCATgtctttttattcttcttcattATGAAAGCACCCgcttgcaataaaaaaaacatatgaaacgtatatatgtgtgcatCCTTCTGCACGGGTCTTCTGCAGTCGAAGAAGCCGTGTAGCATCTTGTTGCTGTCCGTCCTCGTTTACTGTCTTATATAAAAGGatcatgtaaaaaaatgaaagcaaatataAAGCATGTTCATTCTCAGCAGTGGTCGTTTTTATGCATTAGTCCGCCTTGGACACGTTACAGGGATGGAGGGAAGTTATATTTAAGCAGCGCGTTGTGCATATTGAGTCGATTACAAATGGCTCGTTAGTTAACAAGGTCCGAACATATCCCATCGAgtagaaatatataatactaccttttatttttgcagctGTCAAAAAGCTGAACTTCCGGGGACGGGTCGTCGCCATAGGATGATTTTAAGGTAGATTGAGGCTGCGCCAAAAATAGAGAGAAAAATTGAAACAGGGATGAAATATATGTGTACAGGATCTAATCCACAGTCTCTTTAGTTATCTGTAATGATCCGTTTTTTCCTCTCGTGTGTAACGCATGATCTCAAGAAATCACTGGCGCTTGTCTGCCTCCAAAGCGTGTATTTGTTCCCATTTTTTAAAGCTTAGCTAATGCAATCGTTTCAGTCTGGATGCACAGCCACCACCTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22852 lncRNA upstream 41328 46563970 ~ 46564202 (+) True G18420
TU22815 lncRNA upstream 233124 46371967 ~ 46372406 (+) True G18386
TU22791 lncRNA upstream 499012 46105597 ~ 46106518 (+) True G18365
TU22789 lncRNA upstream 503907 46101066 ~ 46101623 (+) True G18363
TU22781 lncRNA upstream 584185 46019341 ~ 46021345 (+) True G18357
TU22897 lncRNA downstream 309964 46918346 ~ 46920546 (+) True G18462
TU22899 lncRNA downstream 322199 46930581 ~ 46930895 (+) True G18464
TU22914 lncRNA downstream 420405 47028787 ~ 47038523 (+) True G18470
TU23000 lncRNA downstream 870596 47478978 ~ 47479256 (+) True G18538
TU23063 lncRNA downstream 1246010 47854392 ~ 47854658 (+) True G18582
AMCG00017119 mRNA upstream 4813 46599760 ~ 46600717 (+) True AMCG00017119
AMCG00017117 mRNA upstream 96994 46506327 ~ 46508536 (+) True AMCG00017117
AMCG00017120 mRNA upstream 185688 46416397 ~ 46419842 (+) True AMCG00017120
AMCG00017121 mRNA upstream 190174 46413402 ~ 46415356 (+) True AMCG00017121
AMCG00017114 mRNA upstream 277817 46312894 ~ 46327713 (+) True AMCG00017114
AMCG00017118 mRNA downstream 2334 46610716 ~ 46621777 (+) True AMCG00017118
AMCG00017123 mRNA downstream 164093 46772475 ~ 46808666 (+) True AMCG00017123
AMCG00017124 mRNA downstream 245546 46853928 ~ 46892467 (+) True AMCG00017124
AMCG00017131 mRNA downstream 398753 47007135 ~ 47036741 (+) True AMCG00017131
AMCG00017127 mRNA downstream 432495 47040877 ~ 47044679 (+) True AMCG00017127
TU22550 other upstream 1949432 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 2473928 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 4207743 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 8101898 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 12504667 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 2794337 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 3105142 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 3943498 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 3951068 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 6205871 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile