RNA id: TU23711


Basic Information

Item Value
RNA id TU23711
length 1468
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G19114
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50559450 ~ 50563278 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTAACCCCAGGAAAGAGGTCCTTTTGTTTGCACCACCACCTCCCACCAGCCCCTCTGGCTATATTTGACTGATTTGTCCAcacagaatcttttttttttttccttcctgtcACAGAGAGCGTTCGACTCACCCATACCCCGTTNNNTTTCCACACAGATCATTTTCATGGTCGGCCGAGGGTATTTATCTCCAGACCTCAGCAAGCTGTACAAGAGCTGTCCCAAAGCCATGAAGAGGCTTGTAGCAGACTGcattaaaaaggcaaaagaCGAGAGGCCGCTCTTCCCTCAGATCTTGTCCTCGATAGAACTGCTGCAGCACTCGCTGCCCAAAATCAACCGCAGTGCCTCGGAGCCGTCCCTCCATCGAGCCTCGCACACCGAAGACATCAACTCATGCACTTTGACCTCCATGAGGCTGCCTGTGTTCTAGCACCGCCTCCCTGCCCCACCCCATCCAGGCCAAATACCCTCAGCTCAACAGAcggaacaaaaacaacacaacagtgcaatccagtgtatgtatgtgtatcaCTGCAGCCGGTGCAATCACACTGCAGCACCAATAATAAGAACTTAACAGGTGAGAGAGGGTATTCAGTTGTATGAAGGACATGAAGCTTTGTTCCTAGTTTTCTTACTGCCCCTCCATCTAATGGGGAAACAGCGCGATGGCCGACACACGGAGAGCCAGACTACTTTTCAAGACTGCGGGAAACGAATTCAACAGGATCGTTTGGAACAGTTACAGGATTCAAGAAAACCAAGAACTGCAAACCTGTTGAAAACCTCTTGATTCTTCTCCATTTAGCAGTTAAGTTTCACTTAATGGTGAAACAATGCTGCACAAACCCATGAAATGGAAGTGTAAAATTGGTAAAAAGTAGGACAATACTACACAATTATTCCCAACGTCATGAAATCCCAGCCTCTATGGTATGAACCTTAACTGCAGGTAAACTTTAAGGGAAAATCTCTTGTTGGTGCTGTGCACACAATTACTATATTTTCCTGTCATGCAATCACCCcatatggaaacaaaattaagagATGTGAGCATTggattgtttttggttttagcTCTATTTAAGTAATCAGTGCTGACTTTCTACAACACCggtcaaaggttttagaacacctacatttttccagttttcattgaaatttacaatgtttaatgtctcaatgtactctgaaattaaagcatagaacaaataaacaattggattccatgatttctttaacaaaatttaaccccttaagctgacaaacaaaccttaaaagggcaccaaatccatgtgcttctccttaatcccatgtgtactcttcactgttgtgtttgccaagtgtttggtctCCCATGAAAGCCGAGACTCTCAGCTTtataacgatgtgaagcattctcggatgtgaaaaatgtgttttttataaccacccgcattctgaaatgggggggtggggtgatAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23651 lncRNA upstream 207503 50351252 ~ 50351947 (+) True G19062
TU23650 lncRNA upstream 217300 50341417 ~ 50342150 (+) True G19061
TU23648 lncRNA upstream 224944 50333760 ~ 50334506 (+) True G19059
TU23647 lncRNA upstream 226084 50332466 ~ 50333366 (+) True G19058
TU23628 lncRNA upstream 403625 50155453 ~ 50155825 (+) True G19042
TU23752 lncRNA downstream 68100 50631378 ~ 50631634 (+) True G19146
TU23759 lncRNA downstream 77309 50640587 ~ 50640802 (+) True G19152
TU23810 lncRNA downstream 164462 50727740 ~ 50728151 (+) True G19195
TU23870 lncRNA downstream 574015 51137293 ~ 51138835 (+) True G19245
TU23904 lncRNA downstream 732554 51295832 ~ 51296718 (+) True G19275
AMCG00017207 mRNA upstream 21780 50526813 ~ 50537670 (+) True AMCG00017207
AMCG00017206 mRNA upstream 36908 50517042 ~ 50522542 (+) True AMCG00017206
AMCG00017205 mRNA upstream 46095 50501043 ~ 50513355 (+) True AMCG00017205
AMCG00017202 mRNA upstream 82695 50458963 ~ 50476755 (+) True AMCG00017202
AMCG00017201 mRNA upstream 113653 50441547 ~ 50445797 (+) True AMCG00017201
AMCG00017212 mRNA downstream 51961 50615239 ~ 50621947 (+) True AMCG00017212
AMCG00017210 mRNA downstream 68830 50632108 ~ 50638968 (+) True AMCG00017210
AMCG00017211 mRNA downstream 81834 50645112 ~ 50652585 (+) True AMCG00017211
AMCG00017209 mRNA downstream 101048 50664326 ~ 50672185 (+) True AMCG00017209
AMCG00017217 mRNA downstream 133568 50696846 ~ 50711492 (+) True AMCG00017217
TU23710 other upstream 6465 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 837979 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 1155816 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5903352 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 6427848 44126214 ~ 44131602 (+) False AMCG00017078
TU24289 other downstream 2250975 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 2257783 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 2772631 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 2940154 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 3227269 53790547 ~ 53792694 (+) True G19829

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000021_05808363_05825783.mRNA True 2220 mRNA 0.50 15 CI01000021 5808193 ~ 5825838 (+)