RNA id: TU23904


Basic Information

Item Value
RNA id TU23904
length 887
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G19275
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51295832 ~ 51296718 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTTACACAGCGCCTGTGCAGCTGATCAATTTAATGGATtgaacatataaaaataaagcacaacaaAGAAACccacattttgtacaaaaaacaaaacaaaaaaatagttcAATTTTGTAAAGTTTGATCTGAGTGTATTTCAATTCTGAGGAGTTGATACAAGATTCCCATTGGTAACTAAAACACTGCAATAGATAACCACAGTAAACCTTGTTAGAAATGTACatataaccaaaataaaagaaaaggcatGATGGCAGGGTTATACCACATAgctgcttaataataataacaagaataataacaagaataatcaattataataacatgtattaatGTCTTAAGAGAGCATGTTTCTAATTGAGGCCCTGTTACAGTAAGCACCAGAgccttgaaaacaaaatcatgacagaaaaaaaaaataaaaaataaaacatatatatataatttcggTCCTAAAACCAATTGCCGAGCGcctgaaaaaaatgcaaacaaggcCTCAGAACGTATTGTTTAGTTACTGTTACCAGATTCCTAAAAGAAGACTTCCACAagctgataaaatatttaaaaacaaagctcttaagaaatgtacaaatataaaaagctacaaacattaataaattacatcacagacacagaaaacactTCACAAGGTGCTAGTGAAATAATTTGAATCCCATCAGGTTACGAGGACGAAAACAAAGAGCTGGTCGCAAAAACAGAGGCTTTTTTCCCCTAAAAGCTTCATCTCTTGTTGCAGGTGAATCATAACAAtgcagttgtttgtttgtcgAGTGTAAGGCCATACTAAGTTGGTTTCATTTTTCAGGCAACACCacaatctaaaaaacaaacttaaaaaaaaataaagccctACATTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23870 lncRNA upstream 156997 51137293 ~ 51138835 (+) True G19245
TU23810 lncRNA upstream 567681 50727740 ~ 50728151 (+) True G19195
TU23759 lncRNA upstream 655030 50640587 ~ 50640802 (+) True G19152
TU23752 lncRNA upstream 664198 50631378 ~ 50631634 (+) True G19146
TU23711 lncRNA upstream 732554 50559450 ~ 50563278 (+) True G19114
TU23921 lncRNA downstream 43195 51339913 ~ 51340117 (+) True G19292
TU24023 lncRNA downstream 268571 51565289 ~ 51571994 (+) True G19366
TU24151 lncRNA downstream 810230 52106948 ~ 52116341 (+) True G19465
TU24211 lncRNA downstream 1251031 52547749 ~ 52548031 (+) True G19515
TU24295 lncRNA downstream 1500214 52796932 ~ 52802211 (+) True G19588
AMCG00017230 mRNA upstream 81316 51214259 ~ 51214516 (+) True AMCG00017230
AMCG00017231 mRNA upstream 83441 51212179 ~ 51212391 (+) True AMCG00017231
AMCG00017229 mRNA upstream 119373 51169613 ~ 51176459 (+) True AMCG00017229
AMCG00017226 mRNA upstream 130584 51159919 ~ 51165248 (+) True AMCG00017226
AMCG00017227 mRNA upstream 227507 51048621 ~ 51068325 (+) True AMCG00017227
AMCG00017243 mRNA downstream 342919 51639637 ~ 51640615 (+) True AMCG00017243
AMCG00017238 mRNA downstream 350686 51647404 ~ 51649518 (+) True AMCG00017238
AMCG00017237 mRNA downstream 356812 51653530 ~ 51663841 (+) True AMCG00017237
AMCG00017246 mRNA downstream 426981 51723699 ~ 51725528 (+) True AMCG00017246
AMCG00017248 mRNA downstream 461007 51757725 ~ 51827775 (+) True AMCG00017248
TU23712 other upstream 734044 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 742847 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 1574361 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 1892198 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 6639734 44654652 ~ 44656098 (+) True G18192
TU24289 other downstream 1517535 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 1524343 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 2039191 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 2206714 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 2493829 53790547 ~ 53792694 (+) True G19829

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU124135 True 3771 TUCP 0.43 6 NC_048566.1 6856086 ~ 6868976 (+)
eurasian perch (Perca fluviatilis) TU58348 True 968 lncRNA 0.36 1 NC_053115.1 33867580 ~ 33868547 (+)
tiger barb (Puntius tetrazona) TU124135 True 2788 lncRNA 0.36 3 NC_056709.1 21979751 ~ 22043312 (+)