RNA id: TU24335


Basic Information

Item Value
RNA id TU24335
length 5518
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G19617
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52858153 ~ 52863723 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACAGTTTAGAGCAACTCAGGAGAAAAGGCTCATCATGGCATGCTCTACCCTGCCCAGGCGGCTCTTCAGGGCACGCTCTACCTGCCCAGGTGGCTCATGATGGCACGCTCTACCTGCCCAGGTGCCTCATGATGGCACGCTCTACTCTGCCCAGGCAGCTCCTCACCTGCCCAAGAGCTGGACTGTTTGTATGtgattttctttcctccttctCTTCTTTCCCACTTCTACTGCTTTCAACAGGGGAATCCCAGACCAGGGGGTTCTTCAGCTTCAATAGGCTACCCGTGGCGTGTGCTTGACTTCCACCACCCCGAATGCAGACTGAAGCATGTTCTTCAGGGCCTGATATTCACACGTGTTATCTAGCTGATACAAGAAGGATAACGGCTGAGGAGCCACAAACGGTTGACTTGaggaactttattttaaaacaaaaataggacaaataaacaaatattctcataacttaaaaaaatcatccataaataatgaacaaactgattttgtattttatttatctactCACATAGTTTCACCCCACCTCCAAGATATGCAATATGTACTTAGTGCTGCACAcagtatataatttaatatatacacactggaAAATAAGCAGACATGTCCTTGGATTGGGGTGGTGCCTGAAGGAACTGAACACCACAGCTATGTATTTACACAGTACATTAAAACACAGCCTCCCCTTTTGTTACAAACTagcattttctttacatttgtgttttgccaAAACTATAAAGTGACAGGCGATCTCCCGGAGGACAGAGCCGCGTCGTCTCCTTCCCCTCCCTGCACCAAAACAGTACGGGTTTAGAAGTCTTTGAAAAGCCAATCGCTGGATCTTAAGATGATGGACCTCTAACTGTAGATTCTGTTAGAGCACTGTACTACTACTATTGACAATGAGGATTAATAGACCTGTCTAAGTCCTAGAACATGCCAGAACCAGCAGTTACACATGCCAGCAGTAAACATGCAAGTGCCCTTAATGATCACATGATTTGTTTTCACAGCGGTCATTGGAATTACCTGCCAATTAAGCTGCTGTCTGTAGTGGGAGGATAGTGAATTACATAAGTGCCAAAGCACATCTCTCCAGGATACACCAGTAACGTGAAAGCAGAGTATGAGGACCACCATGCTGCCACGTAGACTGGCATTATATGGCAGTCACCAAAGCTCAAATCACACCAAGAATCAAAATGGCCAACCTCACTTTCCTACACTGGCCAAGAACCCAGTCGAGGTCCGTCTTACACGAATTTCACAGTGAATAAAGAGACACAGACTTTGATAGAGCATAAAGATCAAGCTTGGGCTGGTTGGGCTCAGTTAGTAAGCACACCACTCTTGCCATAAAGAAATAGTAAGTGAAGTCACAGCATCAGAAGTAACTGCATCTCGTATGCAAAGAATTTAAAAGTGTTCACACAGGTCCCTTCACAGATCAGCTGGGGTTCGCATTCGAGTTGTGTGCATTTGGAGTTTCTGCCCACCTTGGGGCAATTCATTGTCCACCAAGTCCAAGTGAGAATAAAGGTCTGACCCCCGCCGCAAGCACTCTGCTAGTAAAGAGACCCGAGTGAACCCTCTCTGCAACGCATCCCAAGTTGCAGTCCTGGAAAGGGCTACAGCAGCGGCTCGGGCAGAGGGCACTGCCGCACTCGCACCACAAACATCAAGAAAGGggcattttcactttaaaacagtTCACCAAGTTGAAGACCTTGAGCTTTGGGTCAGCAAGGAAGTTTAATACATTGATCTTTTGCaagcagtttatttgtttgggaggggaaaaaagggtgGAAAGTGTTTTGATCTCCTGGATCAAGTGGAGGCCTCAGCCCCAATGATGCAATACAGGTCAAGGACACAAGGTCAAGCCCAGCCTTGATGGCTGGCTAACCCTTTCAAGAGCGTAACGACTGGGTGTCGATGCAGAACTCTCATTTATAATTTACTCCCCCaaagatgaaaataaagcatttcgGTCAAACCAGCAGACCTGGAAAAGATCTGGAAAAGATTTCAAAATTGCATATTTCACATAATTGTTATACTTTGTAATGTAGTTGTAtttggaaacaaatgaaaacaaaaatgaaacaagaCATGCACACTGGAAGAAATGAGCACAATTTGAACTCCACAACCCACACCCATCCATCATGTTGCTTTTTGATCATTGCTGCTCTAATTATTATCCATTAATCTTCGCCTGCAGTGTATTTTAGGCTGTATTTTGCAAACTACTAAACATCATGTGTTTGACAGTCCCAGTTTTCAGTGCAGAGGGAAGATATTGGCAAATGTACAAGTTAGTAACAAGCCATGCTTCAAGAGTTCATCTCACACCCCACTCATCAATCCACCCTTATTTATAAAAAAGGAATGAGCTGTTGTGAAGTGATACCCACACTTAGAAACATGAGTAAGActttatgcttttttatttagtttttaatccgCATATAGGGGCTTTGGTTTAGTCTCTCAGGGGGGCTAGTGCGATCTGTGGAGTCTCTAACTTCACttcaagaaaactaaacaatcAAAGCCAAGTGGAGCAACCACGTTCTGATTTCCTTTGGTGAACGTGGTGGTTTCTTTAAGCACAGGCTGAGGGGCAAGTGCTTCGGAATTGTGTATATGATTTTTATACATCAATACTAGACTTCATCCTTGCCTCCGATTAATCACTTGTTCCACAAAGGCAAGTTCAACTCATCCTTATCATGGGCAGTCCCTCCATTCAGGGTGCAGAGGAAACAAAGGCCCGGGAAGGACATCCCTGGCAGGTCTGGGGCACCCGTTTACAGACTAGCTTTAAAACAACAGGGGGCTTCATAAAAGGGAGAAGAGAAGTGTTCAAAGGGAATTGTCCTGAGGGTGGTCATATGAAAGGGCACACAACACCCCTCACCAGTACTGTCGCCCCTTACAGGGGTCACAGGTAAGCCCATGCGGTAGTTGGACCTGTATGTGGTTTATAAGGTCACATCTGCACCAGCTGCTCCCCCCACCCAGGCCCTCCACCACACAGCCTCCTTCAGCTGTTAACATGGATCTCGCACAGAAAGCGTCTCAGACAGAAACTTGCATAAAAGGGCATCTCCCGCACATTTGacattcatttcattaaacacaGGGGacgtggtgggggggggcatgtGTGATGTCCTGGTGCATGCATCTTACTAGAGAACCACAAATCAATTCTGGATTGAGAACATTTGGGATTACTCAACCACCAGCCTTGCGTAACAGACATCTCTGGTATCTAGCAGCAGGTGTGAGTGTGGACGGTCACCCAGGAGGCTACAACACCCATGTTGGCCTCAGGCAGTTTCTTCACATTACAAGTGTGCTAACAGATCATATAAAGCTTGTGACACAAAATGAACTGAGCCACAACAGAGCTGAAGCCACACACTGCCTCGCCTGGTCTTTTTCAAGCAAGATAACTGATCAAGGTAGAGTCACCCAAGGAGTTATTCTAGTACCAAAACTGCAGTCGAACTACACAAGACTTAGGTTAATAGATATTTGAGTGACTGTAAGTGGATGATGGGAAGATTTTGACACCACTACAAATTTAGTGTTTTACCAGCATCAACAAATGCCAGATCagagattttaaataaagacaagATGCAAAACTGGCCGAGACTTCCCCCGACTGTGTGTGAGGCTCGTGCAGGGAACGGCAGAAGATAATCAAGGACCCTGCTGAACATCCTCCAAGCACATTCTCTGGTGCGTTCATTTCCACTTGGCTGttggaaacattaaaaaaggaaaatacctGCTAGGCTTCCTCAGTGTCAGTTTGTGAAGTAGATAAGCTCGACCTTGCATCCTCTGGGAGCCCTGCTGCAGTCTGATCTGCGCTTCTAAACAATGGGCTGCGGTGCAGAGAGGAAAGACAGGAGTTGACAGCACGGCCAAGGTTGGCAAGGCCCGGCCCGGAGAGCTCCACTAGAAGGGGTTCTGGCTTTGAAAACCGCAGTCCAAGAGCTCGTCAAGCCCTCTCTCAGGAACATGGCTATCCTGCCACCTTGTGACATGAAGGAGCGCTACACCTCTCACACCTGCCTCTGGCAGATGGCATAACCTggtcagtggttctcaactCTGGCGGAACACTGACCCTGCTGAGCTCTCACTTAATTGAGCCGCTTATTTcaataatttgattacatttgaatctttaaattgtgtaactgataagtTGGTTCCTTGACAAGAATTTCCTTAAACGATTGTATACTTAACTTTAAACCTAccgttaaaaataataaaaaggctgTGATGTAGgaaatgacttcaattaagggttcaattaagtaattgagagatcaATTGGCACAAACCCCAGCAGGGTCAGTGTCCCgccaggaccaggactgagcACCTCTGAGCCAGATGAGCATCGTGTGCTGTCTGGCCTCCCGATTGCTTGCAAAGTTCCCTCCCGCGTGCTGCCGGCTTAAGTGCCATGTTAGTACCAGTGAGAATCAGTTAGTACCTTAGACGGGGCATTGAAAGAAACTGGTGCACATTTAATAACAGGCCAAACGAACCTGGTTTGGGGGCTTGTCTTGAGTGGTGCaactgaattgtttttttattggttggttatttttaaactaatcaTTAACAAATTTCACCAGCTGTTGAACCTCCTCTCCCGGCATCAGGAATCATTCCCACCTAAATAAACACAGCCATCGTCCAGCATCACTGACTGGCAGGTACTGCATTGGTTAAAATGCCAAAGTTTCCACAAGCGCGGTCCTCATCTACTCATGCTTTCAGCATCACTTCCTTTCCTACTGCTCCAACCACGGGTGTCAATTGATCAGTTTgaagcagaaaaacacagattCTCCCTCTCTGGCTCCTCACTAACGCAACGACGTTCTTAGAAAAGTATGCAACCCTACTTGCAGATTTAAATCAtttctcccccccacacacactttgtttttctttcatgatGTCACAAAGATACGTACTGACCTTAAGAACCAGGAGtcaaaacgaaacaaaaaaaatgaacgGACAGTTTTTGCCGATTTTTACATTCCAGGGACGCTAGACTAGATTAGTGAACGGAGCAAGATCGTGTCTTAAAAACCCACTAACATGAGCACATGGGGTTGTATGTTTCACAGATTGCGAGGAACCGGGTTGCTATTGCACGGTGTTTTTTCTCACGCTTTCCCCATCAGTGCCCCCCCGTCACCACCTCCTTCTtctcacagcacacacaccagACCTCACATGAGCTGGGCAGGGCAGGCGACCCATCCACGCGGCGGCACTGTCCGCTCTCCGAGACACCATGGCGAGAATGAAGTTCAAGAGGGGCTGCAAAGGGAGAAGGGGGGGACGGAGTCGCAGGGCGCTGGCTGTGTTTCCTCCAGACGTCGTGGCCTCACACCTCACACAGGACGACGGGGAAGTCGACGTGGATTCGCGGGTGATCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24301 lncRNA upstream 3431 52850931 ~ 52854722 (+) True G19591
TU24295 lncRNA upstream 55942 52796932 ~ 52802211 (+) True G19588
TU24211 lncRNA upstream 310122 52547749 ~ 52548031 (+) True G19515
TU24151 lncRNA upstream 741812 52106948 ~ 52116341 (+) True G19465
TU24023 lncRNA upstream 1286159 51565289 ~ 51571994 (+) True G19366
TU24364 lncRNA downstream 70041 52933764 ~ 52935403 (+) True G19641
TU24365 lncRNA downstream 70041 52933764 ~ 52934977 (+) False G19641
TU24386 lncRNA downstream 143437 53007160 ~ 53007531 (+) True G19660
TU24390 lncRNA downstream 160902 53024625 ~ 53024934 (+) True G19664
TU24405 lncRNA downstream 375383 53239106 ~ 53283206 (+) True G19675
AMCG00017287 mRNA upstream 35890 52821206 ~ 52822263 (+) False AMCG00017287
AMCG00017280 mRNA upstream 40784 52814462 ~ 52817369 (+) True AMCG00017280
AMCG00017279 mRNA upstream 97649 52757463 ~ 52760504 (+) True AMCG00017279
AMCG00017275 mRNA upstream 114262 52741163 ~ 52743891 (+) True AMCG00017275
AMCG00017267 mRNA upstream 444242 52384020 ~ 52413911 (+) True AMCG00017267
AMCG00017288 mRNA downstream 54329 52918052 ~ 52922397 (+) True AMCG00017288
AMCG00017290 mRNA downstream 66767 52930490 ~ 52933688 (+) True AMCG00017290
AMCG00017289 mRNA downstream 73177 52936900 ~ 52951955 (+) True AMCG00017289
AMCG00017297 mRNA downstream 390944 53254667 ~ 53275017 (+) True AMCG00017297
AMCG00017301 mRNA downstream 422706 53286429 ~ 53302089 (+) True AMCG00017301
TU24309 other upstream 24111 52821061 ~ 52834042 (+) True AMCG00017287
TU24289 other upstream 41055 52814253 ~ 52817098 (+) False AMCG00017280
TU23712 other upstream 2296365 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 2305168 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 3136682 49713524 ~ 49721471 (+) False AMCG00017183
TU24421 other downstream 472186 53335909 ~ 53339655 (+) True G19683
TU24512 other downstream 639709 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 926824 53790547 ~ 53792694 (+) True G19829
TU24611 other downstream 930903 53794626 ~ 53800301 (+) False AMCG00017325
TU24632 other downstream 990184 53853907 ~ 53855839 (+) True G19854

Expression Profile