RNA id: TU24421


Basic Information

Item Value
RNA id TU24421
length 1549
RNA type TUCP
GC content 0.48
exon number 2
gene id G19683
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53335909 ~ 53339655 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAGagttaacagaaaacaaaaacaagagcaaACTTTACATTCCAGTCTCCagtctttatttctcttttatttatatatttttggaccCGATTGCCCCTGAGATGTGAAGGGACAGGGAGCGCAGTGGAGCACTCTGCTATACCTCTCACCCGCACATCCCCACCTgcccctgccctctctctctagTGTCTTTCTATTAGAGGCTTAAAGAaacgagagagtgagagaaagagagaatgagagCGCATGGATCAAGTCCCCCCTCTTTGTGAGGAACAACCTTTGACCTATTCCTTATCGCACCCTGAGgttcaacaaaaacacaaagacgtTCACCCATCTTCTCAAAGACGACACATCTTATCTTTGtcgattacattttttaagttattgttaactataatagaaatatatatgataCTTCCAAAAGAGAAAAGTGAGTGTTTCAGTCCATGGGGCTTGACTACAGTCGGTTCAGGAGGTGGGGAACGAACACGGTCACCTGCAGTGAAGTACAGAACGGCTGCAGGTGAAGTGTGCAGGGAGTGGGTGCATAAGGGTGGGGCAAATCCACTTCCTACGAGCTGCTGCTCCAGGGTGGGGCAAATCCATTCCCTACGTCCTGCCCctcctgcaggttttacaaGAACTGTTCCATTAGCAACAGGTGAGATGATGTTTTGTCTTAATAACGACTTCAATGGAGTTATTAAGACCTAAGGTGTCATGAAGACCGGACACCCCCAAGGACTGGACCTGCCCAGCCCAGATACAGGTAAACCACGACGAGCATTTACTGTGTCACTGTGCAGGCTGTGCAACCCGACTGGCTAGGACTGTGTCCCCCTGGTTTGCTTAAACCATCTTCCCTTTACCTCCAGTCGAGCAGAGAACCTGAAGTGAGCGAGTGAGTCTCACTGCAAGCCCGCTTGCAACTGAGACCAGTCCTTAAATAGTCTGTACATCTTGCAACAACATATCTATAGGTAGCCACTGTGAGGCCACCACATCCCCACTCAGAGTTCCTCTTACGGTGTCATTCCAGCCACGCTGGGATCGTTAAGCCTTTAATTGAGCACTCTTTCGTCAAGTGAGAGAGAACCTTTATGGAAAGTATTCATCATTGGGACAGATCGCTGCCGGGACAGAGGCCTGTATACCAGCAAGACATGAGAATaggaaaatgcagaaaatggaTGGCAATAGACCCCATAAATGCTTCTGAGGTTTGTctcctatatatatacacatactggCTTTCCGTTATTGTAGCCCTGTGGAAAACCCAAAGAGACCATACTGTAACGAGCTGAGGAATGAAGGAGAAGCAGGGCtccactctctcctctcctggTTTCTTTGTGACAGATCGGAGAAGNNNNNNNNNNGCAGAGACATCATGCGTTGATGGCGTTGGCCACGTCCGTGAAGACGAGTCGACTGGGCCTCTGGATGGTCCCCTGGCTGGGCATCAGAgtctgagagaggaggagagggagagaggggagagaggagcaCATTGTCCGGGTAAGAAGGTTACAGCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24417 lncRNA upstream 525 53306095 ~ 53335384 (+) True G19679
TU24404 lncRNA upstream 14971 53276881 ~ 53320938 (+) True G19674
TU24405 lncRNA upstream 52703 53239106 ~ 53283206 (+) True G19675
TU24390 lncRNA upstream 310975 53024625 ~ 53024934 (+) True G19664
TU24386 lncRNA upstream 328378 53007160 ~ 53007531 (+) True G19660
TU24475 lncRNA downstream 69310 53408965 ~ 53409300 (+) True G19729
TU24503 lncRNA downstream 112475 53452130 ~ 53533874 (+) False G19751
TU24505 lncRNA downstream 112609 53452264 ~ 53527622 (+) True G19751
TU24506 lncRNA downstream 187094 53526749 ~ 53533874 (+) False G19751
TU24508 lncRNA downstream 187094 53526749 ~ 53527622 (+) False G19751
AMCG00017301 mRNA upstream 33820 53286429 ~ 53302089 (+) True AMCG00017301
AMCG00017297 mRNA upstream 60892 53254667 ~ 53275017 (+) True AMCG00017297
AMCG00017289 mRNA upstream 383954 52936900 ~ 52951955 (+) True AMCG00017289
AMCG00017290 mRNA upstream 402221 52930490 ~ 52933688 (+) True AMCG00017290
AMCG00017288 mRNA upstream 413512 52918052 ~ 52922397 (+) True AMCG00017288
AMCG00017300 mRNA downstream 16926 53356581 ~ 53363297 (+) True AMCG00017300
AMCG00017303 mRNA downstream 35229 53374884 ~ 53380042 (+) True AMCG00017303
AMCG00017307 mRNA downstream 41240 53380895 ~ 53387713 (+) True AMCG00017307
AMCG00017308 mRNA downstream 48729 53388384 ~ 53392592 (+) True AMCG00017308
AMCG00017304 mRNA downstream 59200 53398855 ~ 53408838 (+) True AMCG00017304
TU24309 other upstream 501867 52821061 ~ 52834042 (+) True AMCG00017287
TU24289 other upstream 518811 52814253 ~ 52817098 (+) False AMCG00017280
TU23712 other upstream 2774121 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 2782924 50551880 ~ 50552985 (+) True G19113
TU23515 other upstream 3614438 49713524 ~ 49721471 (+) False AMCG00017183
TU24512 other downstream 163777 53503432 ~ 53536464 (+) True G19754
TU24604 other downstream 450892 53790547 ~ 53792694 (+) True G19829
TU24611 other downstream 454971 53794626 ~ 53800301 (+) False AMCG00017325
TU24632 other downstream 514252 53853907 ~ 53855839 (+) True G19854
TU24638 other downstream 524453 53864108 ~ 53864718 (+) True G19860

Expression Profile