RNA id: TU24505



Basic Information


Item Value
RNA id TU24505
length 661
lncRNA type sense_over
GC content 0.55
exon number 3
gene id G19751
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53452130 ~ 53533874 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gtgtgtgtgtgagtgtgtgtgtgtgtttgtgtgtgtgggtgtgtgagtgtgtgtgtgcgtgtgtgagagagtgtgtgggtgtgagagtgtgtgggtgtgtgagtgcgtgtgtgggtgtgtgagagtgtgtgtgtgtgtgtgagtgtgtgagagagtgtgtaggtgtgtgagtgtgtgtgtgtgtgtgttgaggctGTGGGCGGCAGAAGGCAGGATGGCTGTGAAGTTGCAGGTGTCAGGAGCGTGACCGCACACTTCAGGATCGCGTCTCCCTTGTGGAGTGGAGCCCCCTGTGTGCCGGAGGGCAGGAGGGACAGCACTGCCGTTTGTCTCCCCGGCCCCCGGGAGGCGGATTATGATTTTTAAGGAGTTGCATTTTGGCGACACCAGGACTTTGCCAGGATTGTGGGTTCGGGCTGGCTCGGTTCTGTTTGAAAGACGGGTCTGACTGTAGGTCTCTCGGTGCAGCGCGGCCTGTCAGCACAGCCGGGGTGTATAAACCGCTAGGGGTTCGGGTAGCCTGGGTGAGGGCCAGGACTGGGGGTTCACGGTGATTAAAGGTCGAAGGTCAAAGTTCACGGGGTGCACTGTAATCTTTGAGTCACTGTGGAGGAGTGTGGTGTAaattaacacaataataaataaaactgaaaaaactgaG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU24475 lncRNA upstream 42964 53408965 ~ 53409300 (+) True G19729
TU24417 lncRNA upstream 116880 53306095 ~ 53335384 (+) True G19679
TU24404 lncRNA upstream 131326 53276881 ~ 53320938 (+) True G19674
TU24405 lncRNA upstream 169058 53239106 ~ 53283206 (+) True G19675
TU24390 lncRNA upstream 427330 53024625 ~ 53024934 (+) True G19664
TU24558 lncRNA downstream 144362 53671984 ~ 53673814 (+) True G19789
TU24613 lncRNA downstream 286163 53813785 ~ 53813987 (+) True G19836
TU24615 lncRNA downstream 288223 53815845 ~ 53816076 (+) True G19838
TU24679 lncRNA downstream 385196 53912818 ~ 53914877 (+) True G19889
TU24680 lncRNA downstream 387503 53915125 ~ 53924054 (+) False AMCG00017331
AMCG00017305 mRNA upstream 23203 53419540 ~ 53429061 (+) True AMCG00017305
AMCG00017306 mRNA upstream 33130 53409380 ~ 53419134 (+) True AMCG00017306
AMCG00017304 mRNA upstream 43426 53398855 ~ 53408838 (+) True AMCG00017304
AMCG00017308 mRNA upstream 59672 53388384 ~ 53392592 (+) True AMCG00017308
AMCG00017307 mRNA upstream 64551 53380895 ~ 53387713 (+) True AMCG00017307
AMCG00017314 mRNA downstream 131876 53659498 ~ 53669772 (+) True AMCG00017314
AMCG00017319 mRNA downstream 147256 53674878 ~ 53689906 (+) True AMCG00017319
AMCG00017323 mRNA downstream 194912 53722534 ~ 53734975 (+) True AMCG00017323
AMCG00017325 mRNA downstream 267172 53794794 ~ 53805796 (+) True AMCG00017325
AMCG00017330 mRNA downstream 289650 53817272 ~ 53821473 (+) True AMCG00017330
TU24421 other upstream 112609 53335909 ~ 53339655 (+) True G19683
TU24309 other upstream 618222 52821061 ~ 52834042 (+) True AMCG00017287
TU24289 other upstream 635166 52814253 ~ 52817098 (+) False AMCG00017280
TU23712 other upstream 2890476 50559450 ~ 50561788 (+) False G19114
TU23710 other upstream 2899279 50551880 ~ 50552985 (+) True G19113
TU24604 other downstream 262925 53790547 ~ 53792694 (+) True G19829
TU24611 other downstream 267004 53794626 ~ 53800301 (+) False AMCG00017325
TU24632 other downstream 326285 53853907 ~ 53855839 (+) True G19854
TU24638 other downstream 336486 53864108 ~ 53864718 (+) True G19860
TU24688 other downstream 411915 53939537 ~ 53947618 (+) True G19896

Expression Profile