RNA id: TU24638



Basic Information


Item Value
RNA id TU24638
length 611
RNA type TUCP
GC content 0.53
exon number 1
gene id G19860
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53864108 ~ 53864718 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGCAACGCAACAGTCAGTCACTGTCCGGGGGCACCTGGTGCCGACACCTGCCCTGCGCCCTGGATTATCATGCCCTCTTGCCCTGTATGACCTACAATTCCTGCCCCATCCTACTGCAAACGGGAGGCTGTAATCCTGCTGTCCTAGTTAAGATCTCTCCCAATTAATGCAATACAATTACATGCCATTAAAACGACTTCACCTGTCCGTCAGGGAACAGTTTCCTCAGCACAGCCGCCGGGGCCAAGAAATCTCTGTTCCGGAGGTTTTTAGCGCTGCTCTCCTTAAACCACAGCTTCCCCGGGTCGCCAGAGCTGCTCACGCCGCACTCGGAGCTCCCAGAGTCGGCTTCACCGCTCGCCTCGCCCCGCAGCGCGGAGCTCAGAGCCCGAACCGTGGAGCTAATCCGAAACACCGAATCCTCCGCACTTTCCATAACCTGGATTTACttccgtttaaaatacattcaaataaattaaaaatgaactaaaTGTAATTCTCTACTTCAAATCCATTCATTAGCGACTGGACAACGCACTCGTGTCTCACACTTGGCGCGGCGGAACTCTGGAGGACCGCTTGACTGTTTCCAGTCGGTACTATTTTCCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU24615 lncRNA upstream 48032 53815845 ~ 53816076 (+) True G19838
TU24613 lncRNA upstream 50121 53813785 ~ 53813987 (+) True G19836
TU24558 lncRNA upstream 190294 53671984 ~ 53673814 (+) True G19789
TU24506 lncRNA upstream 330234 53526749 ~ 53533874 (+) False G19751
TU24679 lncRNA downstream 48100 53912818 ~ 53914877 (+) True G19889
TU24680 lncRNA downstream 50407 53915125 ~ 53924054 (+) False AMCG00017331
TU24691 lncRNA downstream 84040 53948758 ~ 54041033 (+) True G19899
TU24693 lncRNA downstream 84040 53948758 ~ 53949029 (+) False G19899
TU24674 lncRNA downstream 94745 53959463 ~ 53961838 (+) True G19887
AMCG00017326 mRNA upstream 29201 53830871 ~ 53834907 (+) True AMCG00017326
AMCG00017330 mRNA upstream 42635 53817272 ~ 53821473 (+) True AMCG00017330
AMCG00017325 mRNA upstream 58312 53794794 ~ 53805796 (+) True AMCG00017325
AMCG00017323 mRNA upstream 129133 53722534 ~ 53734975 (+) True AMCG00017323
AMCG00017319 mRNA upstream 174202 53674878 ~ 53689906 (+) True AMCG00017319
AMCG00017324 mRNA downstream 11868 53876586 ~ 53883504 (+) True AMCG00017324
AMCG00017331 mRNA downstream 50436 53915154 ~ 53936482 (+) True AMCG00017331
AMCG00017335 mRNA downstream 148843 54013561 ~ 54033037 (+) True AMCG00017335
AMCG00017336 mRNA downstream 171796 54036514 ~ 54056665 (+) True AMCG00017336
AMCG00017340 mRNA downstream 288889 54153607 ~ 54170510 (+) True AMCG00017340
TU24632 other upstream 8269 53853907 ~ 53855839 (+) True G19854
TU24611 other upstream 63807 53794626 ~ 53800301 (+) False AMCG00017325
TU24604 other upstream 71414 53790547 ~ 53792694 (+) True G19829
TU24512 other upstream 327644 53503432 ~ 53536464 (+) True G19754
TU24421 other upstream 524453 53335909 ~ 53339655 (+) True G19683
TU24688 other downstream 74819 53939537 ~ 53947618 (+) True G19896
TU24769 other downstream 190082 54054800 ~ 54055175 (+) True G19956
TU24774 other downstream 199640 54064358 ~ 54066187 (+) True G19961
TU24839 other downstream 443077 54307795 ~ 54318213 (+) False G20013
TU24970 other downstream 663034 54527752 ~ 54529204 (+) True G20099

Expression Profile