RNA id: TU24674


Basic Information

Item Value
RNA id TU24674
length 2097
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G19887
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53959463 ~ 53961838 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgttgtgttttgttcctGCAGGATCTCCCAGCGGCCTCCATGTGCAGCGCCACactcccagcagcctctgggggcgaccaccacccccccactcaACAGGGGGGTCTTGtgggtttattattttctctgaacATCTCTTGTGCTTCTCCTCAGCTCAACGATCTGactgaccccccacccccagcacaCTCGGGGACACACAACCGTCCACAAGTCTGTCTCGCACCGTCTGCctccagagtgtgtgtgtgtgtcgtaaGCCATCTCCTCCTCTCTGCGTGCATGTTTGTGTacgtctttgtgtgtgtgtgtgtgtgtgtgtgtctttatgtgCAGCGCTGCAGTCTGTCCTGACCCCCCTGACTCCATACCCCCCGTCCCATCAGTCCAGGAGATTAACACACTCATTATGTTTATATCTATATGttaagaataaaaatgattaaaaagacAGCCTGGTCCCTATTGAGACCAGACCCCCCATCACCAGAGCGTTACAGACCCCCAAGCGCCCCCCATGGAATGAGACGCACGCCGAAGCAGCTCTGACGGCGTCcacagttcacacacacacacaaacaaacatctgtCTCCCCCCGCCTGAGACACGCCCTCTCAGACCAACAACCCTGGACCCTTGGGTTGAagtgcattgcattattttgctgTCTTCTGTGCAAACGCTGCCGTCGACTCATCGTTAGAAAGACAGACAACAAACATCAACcgaaacaaaaaactaacacaAACAAACGTGTGTGTCTTTGAGTGTgtctgtaggtgtgtgtgtgtttgagtgtgagTGTATAAGTGTGTGAATATGTGTAACTATTGCCACTGGTCAGACTAACGTCACtaaaccttaaaaacaaaacaacaaaattagaGGACAGGTTTTCACACCTCGACTCCTCCGAGCGCCGTCTCTGCTGATGTCTCTGGGCCGGGCCGGGTCGGGCTGGACAGAATGGGGGGCGACCAGAGGAGAAACATCCGTGATCAAGTCGGGAACTCACCTCCAGTTCAGGTCCAAATGCACATGTTGTCACACTGCCCCTCCCCCCATCACAGTCCCCTACTCTGCCCTCCCCACCCAACACCCCCAGGAAGGGTCCGGCCCAGATGACACAGAGACAGCACGGTAccagcgaggaggaggaggaggagaccaTGAAGACGAAGACAAATAGGAGCACATCATTAAAGCAACTACTGTGTGACGTCAGTATCCCTGGCATCGGATCAGCGCTGGTCCCACCAGGACGCAGATCCTATAAAATCTGGTACCGTTTGAACCATCCAGTTTTTCTTCAATACGAACCCGTTAAACCAGCTGCATCATTTAATTACCGTTGGGCTTAATTAGTcacagttaattgattaattgattcacAGGCTGTAAGTGACCGTGGTAGCGTCTCAGCCCCAGCACTGATATCTAGTTAGTTGCTGTGGTGTGTTGACCGGACCTCCGACCCACCCACTCTATCCCCTGTCCCTGATTGGACCGAGCCGTTCTCAGAATAAGGGGGTGCTACCCGTTTTCTGATTGGCTGCTGCCGAGAGGAAGACGCGTCCAATCGGGGAAAAAAGGACCGGCCTCCTCGGACGTCCCTcgaaaaggaaaatacaaaaaccaaaccaaacacacaggaaaaaagaaaaaggaaaattagtTCTGTTGGGATTCCAGCGCTGCAGCGGTACAGTCTTCCTTCCTCTTCTCGCCTCCTGCCATGACACGCTTGCGTTGTGTGTTACATACTCTCTCTCACATTCATTCCCTTGTTCCCTCGATCATCCATtcgtttgtttgattttgaagagCAGGGGCCACGCCACTCTGTCCCGCGGCCCCTCGACCCTGgctgaggtcaggggtcaggggtcggATGTCAGGGGGCAGGGCGCTCCTCAGACAGGAAGTCCCAGCCGGTGCTTCTTCTTTTTCACGGGCTTGAGGCCGGTGAGGCGCCGCAGGTCGTCCTCCGCGTCGGAGTCGTCCATCTCGTCGTCCGCGGAGATCAGGATCTACGGCGAGAGGAACGCCGGCGACTCGATCAAGACAGCCGCCAATCAGGGACACCAACCGTTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24693 lncRNA upstream 10434 53948758 ~ 53949029 (+) False G19899
TU24680 lncRNA upstream 35409 53915125 ~ 53924054 (+) False AMCG00017331
TU24679 lncRNA upstream 44586 53912818 ~ 53914877 (+) True G19889
TU24615 lncRNA upstream 143387 53815845 ~ 53816076 (+) True G19838
TU24613 lncRNA upstream 145476 53813785 ~ 53813987 (+) True G19836
TU24771 lncRNA downstream 95022 54056860 ~ 54057920 (+) True G19958
TU24827 lncRNA downstream 209377 54171215 ~ 54171423 (+) True G20006
TU24837 lncRNA downstream 355141 54316979 ~ 54392591 (+) True G20013
TU24855 lncRNA downstream 381564 54343402 ~ 54345777 (+) True G20028
TU24878 lncRNA downstream 480700 54442538 ~ 54444003 (+) False AMCG00017357
AMCG00017331 mRNA upstream 22981 53915154 ~ 53936482 (+) True AMCG00017331
AMCG00017324 mRNA upstream 75959 53876586 ~ 53883504 (+) True AMCG00017324
AMCG00017326 mRNA upstream 124556 53830871 ~ 53834907 (+) True AMCG00017326
AMCG00017330 mRNA upstream 137990 53817272 ~ 53821473 (+) True AMCG00017330
AMCG00017325 mRNA upstream 153667 53794794 ~ 53805796 (+) True AMCG00017325
AMCG00017335 mRNA downstream 51723 54013561 ~ 54033037 (+) True AMCG00017335
AMCG00017336 mRNA downstream 74676 54036514 ~ 54056665 (+) True AMCG00017336
AMCG00017340 mRNA downstream 191769 54153607 ~ 54170510 (+) True AMCG00017340
AMCG00017347 mRNA downstream 243294 54205132 ~ 54208721 (+) True AMCG00017347
AMCG00017349 mRNA downstream 363498 54325336 ~ 54335011 (+) True AMCG00017349
TU24688 other upstream 11845 53939537 ~ 53947618 (+) True G19896
TU24638 other upstream 94745 53864108 ~ 53864718 (+) True G19860
TU24632 other upstream 103624 53853907 ~ 53855839 (+) True G19854
TU24611 other upstream 159162 53794626 ~ 53800301 (+) False AMCG00017325
TU24604 other upstream 166769 53790547 ~ 53792694 (+) True G19829
TU24769 other downstream 92962 54054800 ~ 54055175 (+) True G19956
TU24774 other downstream 102520 54064358 ~ 54066187 (+) True G19961
TU24839 other downstream 345957 54307795 ~ 54318213 (+) False G20013
TU24970 other downstream 565914 54527752 ~ 54529204 (+) True G20099
TU24950 other downstream 611636 54573474 ~ 54582399 (+) True G20085

Expression Profile