RNA id: TU24688


Basic Information

Item Value
RNA id TU24688
length 489
RNA type TUCP
GC content 0.57
exon number 6
gene id G19896
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53939537 ~ 53947618 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagcACCGCTTTGTTATGATAGTTTCTAAAATAGTTTCCCAGAAGAGGTAATTCTGTTCTCTGTTTTGTTCCTCAGCAAACTTCCCTCTTCCAGACTCAGAATACCACTTGTATTCAGGACCCCGCCCTTTTCCTGACCCAAGGATCTTGGATCATCCACCAGAGCCCCCCCTCTCTGTGCGGTTCCTGGTCCCCTCGAAGGTCCAAGTGCTCCCGCTGTGCTTCGACATGCCCGTCTCCCCGGGCCAGACCCTCCTCCTGTTCCAAGAGCCGACCACAGGGTTGGCCATCTTCGTGGAGGTGGGCGCCCAGAGCAGGGGCTCCTTCTCGCGGATCAAGATTCAGATCTCACCCTCGGTGGTGATCAGAGCCAGCGCCCTGGAGGTCACCCTGCTCCACACGGCTACTGTCCAGACCTGGCCCTGGCCCGATGTCAGCTACACCTCTGACAGGTACTGTCCAGCCCCTCCAGTCAgtctgtcaatcaat

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24680 lncRNA upstream 15483 53915125 ~ 53924054 (+) False AMCG00017331
TU24679 lncRNA upstream 24660 53912818 ~ 53914877 (+) True G19889
TU24615 lncRNA upstream 123461 53815845 ~ 53816076 (+) True G19838
TU24613 lncRNA upstream 125550 53813785 ~ 53813987 (+) True G19836
TU24558 lncRNA upstream 265723 53671984 ~ 53673814 (+) True G19789
TU24691 lncRNA downstream 1140 53948758 ~ 54041033 (+) True G19899
TU24693 lncRNA downstream 1140 53948758 ~ 53949029 (+) False G19899
TU24674 lncRNA downstream 11845 53959463 ~ 53961838 (+) True G19887
TU24771 lncRNA downstream 109242 54056860 ~ 54057920 (+) True G19958
TU24827 lncRNA downstream 223597 54171215 ~ 54171423 (+) True G20006
AMCG00017331 mRNA upstream 3055 53915154 ~ 53936482 (+) True AMCG00017331
AMCG00017324 mRNA upstream 56033 53876586 ~ 53883504 (+) True AMCG00017324
AMCG00017326 mRNA upstream 104630 53830871 ~ 53834907 (+) True AMCG00017326
AMCG00017330 mRNA upstream 118064 53817272 ~ 53821473 (+) True AMCG00017330
AMCG00017325 mRNA upstream 133741 53794794 ~ 53805796 (+) True AMCG00017325
AMCG00017335 mRNA downstream 65943 54013561 ~ 54033037 (+) True AMCG00017335
AMCG00017336 mRNA downstream 88896 54036514 ~ 54056665 (+) True AMCG00017336
AMCG00017340 mRNA downstream 205989 54153607 ~ 54170510 (+) True AMCG00017340
AMCG00017347 mRNA downstream 257514 54205132 ~ 54208721 (+) True AMCG00017347
AMCG00017349 mRNA downstream 377718 54325336 ~ 54335011 (+) True AMCG00017349
TU24638 other upstream 74819 53864108 ~ 53864718 (+) True G19860
TU24632 other upstream 83698 53853907 ~ 53855839 (+) True G19854
TU24611 other upstream 139236 53794626 ~ 53800301 (+) False AMCG00017325
TU24604 other upstream 146843 53790547 ~ 53792694 (+) True G19829
TU24512 other upstream 403073 53503432 ~ 53536464 (+) True G19754
TU24769 other downstream 107182 54054800 ~ 54055175 (+) True G19956
TU24774 other downstream 116740 54064358 ~ 54066187 (+) True G19961
TU24839 other downstream 360177 54307795 ~ 54318213 (+) False G20013
TU24970 other downstream 580134 54527752 ~ 54529204 (+) True G20099
TU24950 other downstream 625856 54573474 ~ 54582399 (+) True G20085

Expression Profile