RNA id: TU113928


Basic Information

Item Value
RNA id TU113928
length 1638
RNA type TUCP
GC content 0.45
exon number 3
gene id AMCG00017556
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 10361300 ~ 10497104 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagagagagagagagagagagagagagagagagagagagagagagagagagagggagggagactgCAATATCATTTGTGCATCGCTCACAGTGCTGCAGATACAGATTGCCAACACATGCGGTGCAAATGCAGGTGAAGCCGAGACGCGCAGATTGAGGATGCAGGACTGGGAAAGGCGCATTGCATTGGATTTTAACACCACGTTTCCAGTGCTTGATCGGGATTACAGTTCTCCCCTACTTagatctattttgttttttcaatgccCGGCAATTGACGAAAGTGTAAAGACACCTTATTTATGAAGTCACTGGAGGTAAAAGCCATCTGATGACTTGGAGGCTGGTAAGGAAGCCAGGACAGATCGTTTGCTGCTCGGCTACTGTTACAAGCCATTTCGCAGAGTGACGTTTTCTGTGGTGAGCCAGCCTCAGGACCCGCATCAGGGATCATTGCAGAGTTGCTATGATAGTGGATTGGAAGAATCGGAGACGCCCAGCAGTAAGAGCTCGTCAGGTCCCAGGCTGGGAGCCCTGCCCCTCCCCGAGGACAACTACGAGAGGACTACGCCGGATGGCAGTGTTGATTCAAGGCCACTGCCAGATGTAGCCATGACCGGGAAGTGCACCAGGGAATGTGATGAATATGGCCACTCTGATTCTTGCTGGATGCCTGTGAGAACATCACCAGAAAGAAGGCAGAAGAACCAGCCAAAGCTCTCCACTTTCATGCCCAACACTGAACAAGGCAGCCAGGAAAAGCTTGCCAATGGAGACCCCCCACTCATGGGTGATCGCAACAGAAACCTGCTGAGCAAAAAGATGACGTCATCTTACGAGACCTTCAGCACAGCAAGCTTTGGCAAAAACGAGGATGCCCACCCAGAGGATATACCACTTACGCAAACAGGGGAGTACAAACCGTCTCCCGTTAGTACCCTCACCAGACGGGAAGTATACCTGTAAAACGGTATATCTGTGATCACCTTGATGATTGAAACAAAACTATCACAATACCAACAATAAGGATACAACTAGAAATGATAAAAAATCTTGAGAGAGGGGCCTACTGATAAGACTCTAAGCTTGAAATCTGGTACTGCTGCTGGCAAGTCAGgctttttaattgtgtgctgcctgattatattgtaaaatgtagaattcattttcataacttGCATGCTTAATCCCTCACagattttattgtaaattgatGGCTGCGAATCAGTTTAATGGAAATTGAGTCTGATTGAGAGAGATACGGTGCAACATTGAATGCGACAGGACTCAACTAGGGTTTGTTAATACATTATGTCGTGGAGCCTGATGCAAATGACAGGTCAGTAAAATCTATCACATTTAGTCATCGGGATATCAATCGTCCATGATGAagatgacaaacaaacaaaaaagatggaaaaagaGCATGACATCTTCATAAATATGCGATATCATCCAATATGAACTTTGGGAAGACAGAGCTTTAAAATTCTGCCCTAAGGCTTAGACAATGACTACAATCTTTGTAACCTTGTCACTTACAAGAGATTATACTTGACAATTGGACATTCAGTGAAATCCATgaagcctgttttttttaatgatacttGGAAACAGTGGAAACAGTGTGGTGGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113927 lncRNA downstream 152 10357400 ~ 10361148 (-) True G91321
TU113917 lncRNA downstream 63492 10297405 ~ 10297808 (-) True G91311
TU113907 lncRNA downstream 681079 9677471 ~ 9680221 (-) True G91301
TU113906 lncRNA downstream 685521 9675546 ~ 9675779 (-) True G91300
TU113904 lncRNA downstream 698512 9662564 ~ 9662788 (-) True G91298
TU113962 lncRNA upstream 570609 11067713 ~ 11068015 (-) True G91354
TU113963 lncRNA upstream 654274 11151378 ~ 11151698 (-) True G91355
TU113967 lncRNA upstream 771002 11268106 ~ 11268595 (-) True G91359
TU113970 lncRNA upstream 790751 11287855 ~ 11288163 (-) True G91362
TU113985 lncRNA upstream 793224 11290328 ~ 11291234 (-) True G91371
AMCG00017554 mRNA downstream 813986 9495728 ~ 9547314 (-) True AMCG00017554
AMCG00017550 mRNA downstream 989221 9342114 ~ 9372079 (-) True AMCG00017550
AMCG00017548 mRNA downstream 1075797 9245216 ~ 9285503 (-) True AMCG00017548
AMCG00017549 mRNA downstream 1129547 9229000 ~ 9231753 (-) True AMCG00017549
AMCG00017547 mRNA downstream 1176554 9164861 ~ 9184746 (-) True AMCG00017547
AMCG00017559 mRNA upstream 450642 10947746 ~ 10948005 (-) True AMCG00017559
AMCG00017558 mRNA upstream 451006 10948110 ~ 10949709 (-) True AMCG00017558
AMCG00017557 mRNA upstream 796504 11293608 ~ 11315800 (-) True AMCG00017557
AMCG00017572 mRNA upstream 859701 11356805 ~ 11387412 (-) True AMCG00017572
AMCG00017566 mRNA upstream 917224 11414328 ~ 11423945 (-) True AMCG00017566
TU113686 other downstream 1605393 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 1846345 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 2364705 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 2528708 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 3248119 7112436 ~ 7113181 (-) True G90749
TU114641 other upstream 3936054 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 5369843 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 5533298 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 5533352 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 6971501 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile