RNA id: AMCG00017635


Basic Information

Item Value
RNA id AMCG00017635
length 1080
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00017635
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14599283 ~ 14600616 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgatgaaaataatgCACGATTGTGTTCAGCTCAGTAATGAAAAAGGTTCTGTCATTGCTACTTACCCAGCTGAGAAACTAGCCTTCAGTGCTGTGTGCCCTGATGACAGAAGGTTCTTTGGATTGGTCACCATGCAAGCTACAGATGATAATAGTTTGactaaagaagaagaaagtgcGCTGAGGACTTCTTGTCATGTCTTTATTGTTGACCCAGAGCTCTGTCATCATAAGGTACATCAAGGCATTGCCAGGCGCTTTAATTTTGAGTGTACTCCTGATCCTGACGTCAGTGGCTGCTTGGAATTTCCCCTGACATCCCAGCCTATCTTGCAGTTTGTCTCTGTGCTCTACCGTGACATGGGGGAGTCCATAGAAGGGATGCGCACCAGAGCTTTCTTTGATGGAGATAGTGATGCCCAGCAGAATAACAGCACCAGCAGCAACAGCGACAGTGGGATTGGAAACTTCCTCCCCGAAGAGAGAAACAGTCGAGTTATCTTGGTTGACCTGGGAAGCACACCAAGCCGGCACATCCCCAATGGTCTAAGGGAAAACCCTCAGATAAGGAACCCAAATCAAGCTGCGGCACACTGGAATGGCTATCGCTATGAACAAGAAGGGAAGTATCATTTAGCTGAGCCTCCCCACCCTGATGCCTCCCATATCCCTGGGAGGCATTTTGGTCCTTCTGCTAGGATTGAGGTTCCAGTCCAGCCAGCTAGGCCTCTTTACCCTCCTGGTAAAAAAGCAGGCGCGGCAGGAGCAGGCCAGTCTGGCGGTCAGCGCTGGCTTCCTGTTCATGTATTGCGAGACTGGCAGCAAGGCAACAGCAGCGACCAGGAGTCATATGCGGAGTCCACTGATGGCTGGTCAAGTGCTAACTGCAGCACACTGCCTCCTCCAATGAGCAAAATCCCAGCTGACCGATACAGGGTCGCAGGGGAAATAGTGAAGCCTTCTCGACTCACTGCTCAGAAGGATGAGTGGACCAAAAAGATATTTGGTGCCGAGAAAGTGTTTGCAGACCAGCAGAAGGGCAAAAGGACCAAAGAGGGTGAAAAAAAGAATGGAGATTAA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114571 lncRNA downstream 554756 14044121 ~ 14044527 (-) True G91850
TU114237 lncRNA downstream 1942950 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 2078069 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 2078069 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 2090140 12506627 ~ 12509143 (-) True G91556
TU114757 lncRNA upstream 159465 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 199474 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 323777 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 453847 15054463 ~ 15054684 (-) True G92049
TU114819 lncRNA upstream 454676 15055292 ~ 15056623 (-) True G92050
AMCG00017633 mRNA downstream 47026 14530796 ~ 14552257 (-) True AMCG00017633
AMCG00017630 mRNA downstream 76008 14507573 ~ 14523275 (-) True AMCG00017630
AMCG00017629 mRNA downstream 93330 14492529 ~ 14505953 (-) True AMCG00017629
AMCG00017631 mRNA downstream 114465 14477947 ~ 14484818 (-) False AMCG00017631
AMCG00017627 mRNA downstream 321118 14271536 ~ 14278165 (-) True AMCG00017627
AMCG00017634 mRNA upstream 8294 14608910 ~ 14612595 (-) True AMCG00017634
AMCG00017632 mRNA upstream 13945 14614561 ~ 14657488 (-) True AMCG00017632
AMCG00017639 mRNA upstream 64265 14664881 ~ 14676075 (-) True AMCG00017639
AMCG00017638 mRNA upstream 159452 14760068 ~ 14764832 (-) True AMCG00017638
AMCG00017646 mRNA upstream 402830 15003446 ~ 15012768 (-) True AMCG00017646
TU114641 other downstream 119496 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 4102179 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 5843376 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 6084328 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 6602688 7992137 ~ 7996595 (-) True G90939
TU114907 other upstream 1266331 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 1429786 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 1429840 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 2867989 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 3862168 18462784 ~ 18463176 (-) True G92436

Expression Profile