RNA id: AMCG00017647


Basic Information

Item Value
RNA id AMCG00017647
length 4626
RNA type mRNA
GC content 0.42
exon number 15
gene id AMCG00017647
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15063427 ~ 15074519 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgTAGCTCAAGGTTTTGGAATGCATTTTTCCCTACCTGTTTTTGGAACTGTaatctttttatcttttttttatcatgttgTCCATTTGAAAATTACCAAAATCTTAAATGCTTTTAGACTGCCAGAGGCATTCACTTGTTGAAAGTAGAGAGACCAGTCATTTTTGATTGATTAGTTTTCTTCTATTGAGATTTAAAACTAGAAATCTGCTGTGTTTACTAAGTATCATAATTGACATAGTTTGTGATAAAGCTGTGACATAAGGTGAACATGCTGCTATTGTATAAGTTGTTGTAAGTTAGACATAATgtacacattaaaatgtaataaggggcattaatctttattttttgtatttttgtactacCCATTTTGTCATTCAAGTCCCCTGGATGTGGCAAATGACATGCAAATCTGAAACCATGTTCATTTATCTACCAAAGGTGCAGATTGATAGCTTCACGTATGAAATGCATGCATACTTATTGTAATAAATGACAATGTACCTATGTTTAGTAATTTCAAGTTCTTTTAAGCACTAAATAAGTGAATAGTTTTACTcttttaatgaataatgaatgcaaATTTACTAAGCTTTTAACAACCAGAAATTCAAGTTCTGCAGTCTCCTGTGTGTGCTTCCCTGCAGTAGGACCACAATTACAGTGAAATTGAGTTATTTCTTGATTCTTGTAATCTAATGCATTTAGTTATGTttggaaaaagagaaaatactaACAGTGACATGTTACATATATTGCCAAGCTCACCAGTATATCTGTAAATAACCAGAACCCAGAAATAACTGTTCTGTTTCAGTCTTTCtagcatttgttttacatttcttagtctgctttttgaaatgtttgcatGGAGCAGCCAATATAACAGCCTTAGTCTATCAGAAAAAGATAAGCAAGGGATGCTGACTGCAGAGAGATGTCCATTGTTGTGGTCTACAGTGTTTTGTATGGGGATGCTGGTCTTTGATTCTGTTTAGCAAGCCCACACAAAGCTGCTATGTTGACCCGCTTACTGCTTGTTGCGTGCCGTAATGCGGCCCTGGAGACCCAGTTCAAACCGATGTAATCACTCGTTAATTGACACAAATGTAGAGCATTGTCATAACTTGAATAATGTTGTTTactacattaatattaattctgAGCACTCTGACAAAATAGAGTATGTTTCTAGTACTAGTTCTATAGCggactgttttcagttttaaaatccCACTACTTGGTTGTCTCCTTCGGCCTTTATCTTTTGTCGATGTAGTCTTGGTTGGAATTTGGTGCAAATGCTGGTTTCTTTTCCTCGTCAGAAATGGGGTAATAAAAGCATTGTATGGAGTTTCCTAAGCATCATCATTAACAACAACAGTTACTTAGTAGGTTAGTATCCTGAAAGCAGGTGAGTATGTGTATGAGATTAAATTAGCAGGCTCCAGCAGAGAAGTGGCTCATGGTGTAGAAGAGGCCATGTTAGAGTGAACTCCTGCCCTGGGCACTTCAGTAGGCATGGGCCTGTTAGTACAGTGACTCAGAATTCCTAGGGGGCCATCACTTAATCGTCCTGTTCTTTTCAGTGCCCAGTTCTTAACACgccttgttaaaaatgtttggaCTCCACTGCTTCTCTTTTAAGATCTTTTGATCAGATTTCCGTTTTCGGGTTTTGAAAGTCTTTTATGCGTTTCCACCCAACAGGAGAAAACAAGTCTTACATATTTGTCCTCCTTGGTTTGTACAGCAGAAGGGCATTCAGATCTGATGTATGTTAAAATTAGCAGTGTAGGTAAAATAAGTATTGTAAGACTTCCTACCTTGTAAAAGCTGAATTCTCAGTGTTTCCATCAGCAATTATCACTATCACTCCCCTGATAAGGCATTGTATTTCCTCTAATTGTTGTAATCACTTCGGCACTACATTTTAGTTAATTGCATTGAGGGTATGGTAACTGATTGGTTgattgtatactgtattgttGCCGTATCTCTTTGTACAATATATGTATCAAAGCAGTTCCTAGCTGTTCAGCAGTTGTTCTATGATGTGTGAGTTAGGTCTTACCCTTACTATGTTTGCCTTTAGAGACTTGTGTTTTTAGGGATTGTTTTTTGACAGGAAGCACAAGCAACTGCCACTCGCTCATGGTTTGATCAGCACACTAGTCTGCAGCCAGATGTTTTGCATGTTCCTTTCCAAACTAGGGTTTAATCATGATCAATTCAAGCTGGCAGAGATGTAAATGTCCATCAAACTAACCAAGCCACCTTAAATATTTCTGTGTTCAAGACCAGAGCAGGAATTAATATGGCCAGTACTCTGCAAAGGGCTGTgatgtgtttctctgtctcaaTTGAGCCTTGTGTGTCTCAGACGTCTCCAGATAAAGTGGACTACGAGTACAGCGAGCTGCTGCTGTATCAAAACCAAGTCCTGCGAGAAGCTGGTCTTTACAAAGAAGCCCTCGAACACCTCACCACTTACGAGAAGCAGATCTGTGACAAGCTGGCGGTGGAGGAGACAAAAGGGGAGCTGCTAGTGAACCTAGACAGAATGGATGAGGCGACAGAAGTGTATACCAGACTACAGGAGCGTAATCCTGAGAATTGGTCTTATTACCATGGCCTGGAGAAGGCCCTTAAGCCTGccagtgtagaagaaaaacagaaaatctatGAAGAGGCCTGGGTGAAATATCCTAAGGGGCTGGTGCCTAGGAGACTGCCTTTAAACTTTTTATCGGGTGAGAAATTTAGGGAATGTTTGGATAAATATTTAAGAATGAACTTCAGCAAAGGATGTCCTCCAGTTTTTACAACGTTGAGGTCCCTGTACCATGATAAAGAGAAGGTGGCAATAATAGAAGATCTAGTAGTTGGCTATGAAACATCATTAAATGGCTGCAGAATGTTCAATCAGAATGATGATGGGAAAGAGGAGCCCCCCACCACTTTGCTGTGGGTTCAGTACTTCCTAGCCCAGCATTATGATCAGATTGGCCAACAGACCTTGGCATTAGATTATATTAATGCTGGTATTGAAAGTACACCGACTCTCATAGAGCTCTTCCTCATCAAAGCCAAAATATATAAGCATGCGGGCAACATCAAGGAGGCAGCACGGTGGATGGACGAGGCCCAAGCGCTGGACACTGCCGATCGCTTCATCAACTCCAAGTGCGCCAAGTACATGCTCAAGGCCAACATGGTGAAGGAGGCCGAGGAGATGTGCTCCAAGTTTACAAGGGAAGGTGCCTCAGCTGTGGAGAACCTCAACGAGATGCAGTGCATGTGGTTCCAGACAGAATGTGCGCTTGCTTACAAGTCCATGAACAAATATGGGGAAGCTCTCAAGAAGTGCCATGAAATTGAAAGAcattttgtgGAGATAACAGATGATCAGTTTGACTTCCACACGTACTGCATGAGGAAGATGACGCTGCGGTCATATGTGGACCTGCTGAAGCTGGAGGACGTCCTGCGAATGCACCCTTTCTACTTCAAGGCAGCCAAGACGGCCATTGAGATTTACCTCACCCTGCATGACAACCCACTGACTGACGAGAACAAGGAGCTGGAGGCCGACACTGAGCTGAAGAAACTGAGGAACAAGCAGCGGCGAGCGCAGAAGAAGGcgcagctggaggaggagaagaagaacgCAGAGAAGGAGAAGCAGCTCAAGaaccagaagaagaagaaggaggatgATGACGAGGAGATCGGGGGACCCAAGGAAGAGCTCATACCAGAGAAGCTGGCCAAGGTAGAAAATCCACTGGAAGAAGCAGTTAAATTCTTGACTCCTTTGAAAAActtagtgaaaaataaaatagagacTCACCTCCTGGCATTTGAAATATACTTTAGAAAAGAAAAGTTCTTGCTGATGTTGCAGTCAGTGAAGAGGGCCTTTACTATTGATCCTGATCACCCCTGGCTCCACCAGTGTCTAGTTCGCTTTTTCAAAGCAGTGTTGGAGAGCAAAGACTTGCCAGAGGCAGTGCGCACGGTCCTCAAGCAGGAAATCAAAAGGTTATTTGGGGACAGCAATGCCAAGAGTTTCAATGAAACCTTCCTCAGCAAGCACTCCAACTCCATCCCACACCGAGTAGCAGCTGCCAAAATGATGTACTATCTAGACTCTTCCACTGAGAAGAAGGCTGTAGAACTGGCGACTGCACTGGACGAGTCCCTGGACAATAGGACCATTCAGatctgcacagaggTGGTGGAAAGCTTGCGCTGCGGCAGCCTGGGAGACAACAAGGACATGGCGGAGGTGTACAGAGCAAACTGTCACAGGATCTTTCCCTACACACTGGCATTCATGCCACCAGGCTACGAGGAGAACATGAAGATCACGGTGAACGGAGACGTCTCGGCTGAGCCGGAGGAACTGGCCAACGACATGTGAGACGGAGGGACGGACTCTAGTAGCCCACCACCATTACTGAACACCACCGCCAAGGTTTTTGTCATGCACCTGCAGTACTGCGTCAAAGTTTATATTGAGATAAGGACTAAATGATGTAATTgtattgaggggaaaaaaaactaaaagaagaggagagaaaaaaaatggccattttacttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114820 lncRNA downstream 6281 15056943 ~ 15057146 (-) True G92051
TU114819 lncRNA downstream 6804 15055292 ~ 15056623 (-) True G92050
TU114818 lncRNA downstream 8743 15054463 ~ 15054684 (-) True G92049
TU114785 lncRNA downstream 137467 14924393 ~ 14925960 (-) True G92024
TU114762 lncRNA downstream 263026 14800090 ~ 14800401 (-) True G92006
TU114844 lncRNA upstream 70016 15144535 ~ 15144735 (-) True G92067
TU114846 lncRNA upstream 87799 15162318 ~ 15162712 (-) True G92069
TU114876 lncRNA upstream 410738 15485257 ~ 15485762 (-) True G92093
TU114916 lncRNA upstream 1060861 16135380 ~ 16135707 (-) True G92132
TU114920 lncRNA upstream 1092120 16166639 ~ 16182063 (-) True G92134
AMCG00017645 mRNA downstream 10764 15043670 ~ 15052663 (-) True AMCG00017645
AMCG00017646 mRNA downstream 50659 15003446 ~ 15012768 (-) True AMCG00017646
AMCG00017638 mRNA downstream 298595 14760068 ~ 14764832 (-) True AMCG00017638
AMCG00017639 mRNA downstream 387352 14664881 ~ 14676075 (-) True AMCG00017639
AMCG00017632 mRNA downstream 405939 14614561 ~ 14657488 (-) True AMCG00017632
AMCG00017648 mRNA upstream 1304 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017660 mRNA upstream 138978 15213497 ~ 15213745 (-) True AMCG00017660
AMCG00017659 mRNA upstream 148983 15223502 ~ 15234769 (-) True AMCG00017659
AMCG00017661 mRNA upstream 1711149 16785668 ~ 16797841 (-) True AMCG00017661
AMCG00017663 mRNA upstream 2312965 17387484 ~ 17394619 (-) True AMCG00017663
TU114641 other downstream 583640 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 4566323 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 6307520 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 6548472 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 7066832 7992137 ~ 7996595 (-) True G90939
TU114907 other upstream 792428 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 955883 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 955937 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 2394086 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 3388265 18462784 ~ 18463176 (-) True G92436

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000832 False 3201 mRNA 0.48 20 NC_007112.7 40613297 ~ 40641467 (+)