RNA id: AMCG00017648


Basic Information

Item Value
RNA id AMCG00017648
length 444
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00017648
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15075823 ~ 15080306 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTGCTTTTGTATCCTTCAcaataatcatgttttcttCCTGTCTGTTTTCAAAGAGATGTTATGAACACAAGCAGTACCGAAATGGCCTGAAATTCTGCAAACAGATCCTCTCCAACCCCAAGTTTGCAGAGCATGGAGAGACTCTGGCAATGAAAGGACTAACCCTCAACTGTCTGGGCAAGAAGGAGGAAGCTTACGAGTTAGTAAGACGAGGCCTACGTAACGATCTCAAGAGTCATGTCTGCTGGCATGTGTATGGTCTGCTGCAGAGGTCGGACAAGAAGTACGACGAAGCCATCAAATGTTAcagaaatgcactgaaatggGATAAAGACAATCTCCAGATTCTGAGGGACCTTTCCCTACTGCAGATTCAGATGAGGGACCTTGAGGGATACAGGGTAAGGGCTCACAGATTAGCAGTAACCTCTGTAATATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114820 lncRNA downstream 18677 15056943 ~ 15057146 (-) True G92051
TU114819 lncRNA downstream 19200 15055292 ~ 15056623 (-) True G92050
TU114818 lncRNA downstream 21139 15054463 ~ 15054684 (-) True G92049
TU114785 lncRNA downstream 149863 14924393 ~ 14925960 (-) True G92024
TU114762 lncRNA downstream 275422 14800090 ~ 14800401 (-) True G92006
TU114844 lncRNA upstream 64229 15144535 ~ 15144735 (-) True G92067
TU114846 lncRNA upstream 82012 15162318 ~ 15162712 (-) True G92069
TU114876 lncRNA upstream 404951 15485257 ~ 15485762 (-) True G92093
TU114916 lncRNA upstream 1055074 16135380 ~ 16135707 (-) True G92132
TU114920 lncRNA upstream 1086333 16166639 ~ 16182063 (-) True G92134
AMCG00017647 mRNA downstream 1304 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017645 mRNA downstream 23160 15043670 ~ 15052663 (-) True AMCG00017645
AMCG00017646 mRNA downstream 63055 15003446 ~ 15012768 (-) True AMCG00017646
AMCG00017638 mRNA downstream 310991 14760068 ~ 14764832 (-) True AMCG00017638
AMCG00017639 mRNA downstream 399748 14664881 ~ 14676075 (-) True AMCG00017639
AMCG00017660 mRNA upstream 133191 15213497 ~ 15213745 (-) True AMCG00017660
AMCG00017659 mRNA upstream 143196 15223502 ~ 15234769 (-) True AMCG00017659
AMCG00017661 mRNA upstream 1705362 16785668 ~ 16797841 (-) True AMCG00017661
AMCG00017663 mRNA upstream 2307178 17387484 ~ 17394619 (-) True AMCG00017663
AMCG00017664 mRNA upstream 2345105 17425411 ~ 17462601 (-) True AMCG00017664
TU114641 other downstream 596036 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 4578719 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 6319916 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 6560868 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 7079228 7992137 ~ 7996595 (-) True G90939
TU114907 other upstream 786641 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 950096 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 950150 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 2388299 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 3382478 18462784 ~ 18463176 (-) True G92436

Expression Profile