RNA id: AMCG00017660


Basic Information

Item Value
RNA id AMCG00017660
length 249
RNA type mRNA
GC content 0.57
exon number 1
gene id AMCG00017660
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15213497 ~ 15213745 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCCCATGTTGGGGCCTCTCGGACACCCCAGGAGGTCATGGAGCATTACGTCAGCATGTACATCCATGGCAACCTGGGCAAGGCCTGTATCCCTGACAGCATCCCCAACCGAGTGACGGACCACACCTGTCTGAGTGGCGGGCCGCTCTCTCCCATCCTCACCACTCCACTGCCGCCCCTCAACATTTCTATagtggagcagcagcagcagctgggctacatgcatacatacatttctaaatag

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114846 lncRNA downstream 50785 15162318 ~ 15162712 (-) True G92069
TU114844 lncRNA downstream 68762 15144535 ~ 15144735 (-) True G92067
TU114820 lncRNA downstream 156351 15056943 ~ 15057146 (-) True G92051
TU114819 lncRNA downstream 156874 15055292 ~ 15056623 (-) True G92050
TU114818 lncRNA downstream 158813 15054463 ~ 15054684 (-) True G92049
TU114876 lncRNA upstream 271512 15485257 ~ 15485762 (-) True G92093
TU114916 lncRNA upstream 921635 16135380 ~ 16135707 (-) True G92132
TU114920 lncRNA upstream 952894 16166639 ~ 16182063 (-) True G92134
TU114921 lncRNA upstream 968384 16182129 ~ 16182328 (-) True G92135
TU114934 lncRNA upstream 1101300 16315045 ~ 16315522 (-) True G92146
AMCG00017648 mRNA downstream 133191 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017647 mRNA downstream 138978 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017645 mRNA downstream 160834 15043670 ~ 15052663 (-) True AMCG00017645
AMCG00017646 mRNA downstream 200729 15003446 ~ 15012768 (-) True AMCG00017646
AMCG00017638 mRNA downstream 448665 14760068 ~ 14764832 (-) True AMCG00017638
AMCG00017659 mRNA upstream 9757 15223502 ~ 15234769 (-) True AMCG00017659
AMCG00017661 mRNA upstream 1571923 16785668 ~ 16797841 (-) True AMCG00017661
AMCG00017663 mRNA upstream 2173739 17387484 ~ 17394619 (-) True AMCG00017663
AMCG00017664 mRNA upstream 2211666 17425411 ~ 17462601 (-) True AMCG00017664
AMCG00017665 mRNA upstream 2254861 17468606 ~ 17487497 (-) True AMCG00017665
TU114641 other downstream 733710 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 4716393 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 6457590 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 6698542 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 7216902 7992137 ~ 7996595 (-) True G90939
TU114907 other upstream 653202 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 816657 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 816711 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 2254860 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 3249039 18462784 ~ 18463176 (-) True G92436

Expression Profile