RNA id: AMCG00017731


Basic Information

Item Value
RNA id AMCG00017731
length 990
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00017731
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20393877 ~ 20408258 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGTATGGTGGCGCATGCTCCATGTGCCACCAGCAGGCTCTTGCTGAGAGCATGCTCCAAAAGCGGGAACAGTGTGGTATTACTGAATATGATGAGTTTCATCCGTTCATCGAGGCACTTCTTCCACACGTCCGTGCAATCGCCTATACGTGGTTTAACCTCCAAGCCCGAAAGCGCAAGTACTTCAAGAAGCACGAGAAGCGGATGTCAAAGGATGAGGAGCGAGCGGTCAAGGATGAACTACTTGGTGAAAAGCCTGAGATCAAACAGAAGTGGGCATCCAGGCTGCTCGCCAAACTCCGCAAAGATATCCGCCAAGAGTACCGGGAGGATTTTGTGCTCAGTGTTACGGGGAAGAAGCATCCTTGCTGCGTGCTCTCCAACCCTGACCAGAAGGGAAAAATCCGGAGGATCGACTGCCTCAGGCAGGCCGACAAAGTCTGGCGCCTTGACCTGGTCATGGTCATTCTTTTCAAGGGCATCCCTTTGGAAAGTACGGATGGAGAGCGGCTCGTCAAATCCCCACATTGCACAAATCCAGCACTTTGTGTCCAGCCACATCACATAACAGTATCGGTCAAGGAGCTGGACTTGTTTCTTGCATACTATGTCCAGGACCAAGGCGAAACCAATGCTTTATTCCAGTCGCCcggccagccagccagccaaccAGCCAGCCAGCACATCATTGTCATAGCTCACTTATTTATCAGACAGCTGGGATCATGGAATCTGTCCAGAGAGGGCTCTGAAGCAGAGAAAGAGGCGGAATTCCTCAGTCTAGGATGGTGTCTTTCAGAGGCGAGCCGCGCAACACCAATGGGCATCCTTCATCGCTGGCCACATGAATGGCTGAGCAGGGAGGAGACAATTGGCATTGTTGCCAGGGAGACTGTGCCTTCTTTGCACCCCCTTCTGTTTCCCCACCAAACCCCTTTTATTCTGTCTGGGCAAGGATCACTGGGTGGAGTGATGATCGCCTTCTAG

Function

GO: NA

KEGG:

id description
K09169 NFIB; nuclear factor I/B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115645 lncRNA downstream 35252 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA downstream 76446 20302000 ~ 20317431 (-) True AMCG00017725
TU115611 lncRNA downstream 473725 19905992 ~ 19920152 (-) True G92682
TU115579 lncRNA downstream 526241 19867418 ~ 19867636 (-) True G92660
TU115574 lncRNA downstream 527460 19865972 ~ 19866417 (-) True G92657
TU115649 lncRNA upstream 7048 20415306 ~ 20415612 (-) True G92714
TU115749 lncRNA upstream 215885 20624143 ~ 20624420 (-) True G92798
TU115751 lncRNA upstream 226414 20634672 ~ 20634880 (-) True G92800
TU115776 lncRNA upstream 263807 20672065 ~ 20676278 (-) True G92822
TU115778 lncRNA upstream 268401 20676659 ~ 20734422 (-) True G92823
AMCG00017725 mRNA downstream 48258 20306326 ~ 20345619 (-) False AMCG00017725
AMCG00017726 mRNA downstream 407262 19973418 ~ 19986615 (-) True AMCG00017726
AMCG00017727 mRNA downstream 439065 19948192 ~ 19954812 (-) True AMCG00017727
AMCG00017724 mRNA downstream 503348 19888936 ~ 19890529 (-) True AMCG00017724
AMCG00017728 mRNA downstream 524420 19868999 ~ 19869457 (-) True AMCG00017728
AMCG00017729 mRNA upstream 49957 20458215 ~ 20482752 (-) True AMCG00017729
AMCG00017736 mRNA upstream 90009 20498267 ~ 20514665 (-) True AMCG00017736
AMCG00017734 mRNA upstream 111960 20520218 ~ 20550836 (-) True AMCG00017734
AMCG00017738 mRNA upstream 145409 20553667 ~ 20571410 (-) True AMCG00017738
AMCG00017735 mRNA upstream 163199 20571457 ~ 20584961 (-) True AMCG00017735
TU115494 other downstream 974521 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 974521 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 1930701 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 2919538 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 4362972 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 2909868 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 2909868 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 2909868 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 5604403 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 5604403 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile