RNA id: AMCG00017752


Basic Information

Item Value
RNA id AMCG00017752
length 6360
RNA type mRNA
GC content 0.49
exon number 47
gene id AMCG00017752
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20881493 ~ 20913956 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGGAGCTCCAGTAGCAGCAGGAGTGGCTGTCTGACTCGCCGCAAACATGGCTGCTCAGGATGAGCTCAATCAACTGGAGCGTGTTTTCCTTCGCTTGGGCCATGCAGAGACAGATGAGCAGTTGCAGCACATCATATCAAAATTCCTACCCCCAGTTCTTCTGAAGTTGTCTAGCACTCAAGAAGGTGTGAGGAAAAAGGTGATGGAGTTGCTGGTTCACTTGAACAAACGCATAAAAAGTCGGCCTAAGATCCAACTGCCAGTGGAGACCTTGCTGGTGCAGTACCAGGATCCAGCAGCTGCTTCCTTTGTGACAAATTTCACcatcatttacattaaaatgggaTACCCTCGTTTGGATGTAGAAAAGCAGTGTGAGCTGGCACCTACTTTGCTGACTGCTATGGAAGGAAAACCTCAGCCACAGCAAGATGGCCTAATGCATCTTCTGATCCCAACATTGTTCCACATGAAGTATCCTTCAGAGCCTTCAAAAGTTGCCTCTCCATTCATCCTTGTTGAGAAGCCAAAGACTGTTCACTTGCTGTTAGATTTCATGTTAGATGTACTGCTGATGCCTTATGgGTTTGTGCTGAATGAAACCCAGAGCCGCTCTGCCCCAGCCTCGCCTCAGGGTACGGCAGCCAGCGGGGGCACAGCAGGCCCTGGACTCCCACAGCCTCCTCCGGGCATGAGCTTCTACGCAGCCAAGCGTGTCATCGGAGAAACACCCTGGAGCCCCGAACAGTTGGAACAGTGTAAACTAGGAATAGTGAAGTTCATTGAAGCAGAGCAAGTTCCTGAAGTGGAGGCAGTGGTCCACTTAGTGATCGCTTCAAGTGACACTCGACACAGCGTGGCAACGGCGGCAGACCTGgaactgaaaagcaaacaaagcatAATTGACTGGAATAATCCCTCAATCATTAACAAGATGTATAAGGTGTACCTTGGGGATATTCCACTTAAAACAAAAGAGGGGGCTGCACTGAAACCAGAGCTGAAGAGGGAGCCAGTTAGCACACGGGTCAAACTGAAGATACTCCCTCACCTCCTCAGATCCCGGCTCGCTGCAGAGACGTTCCCTGCCAACATTCAGgttgTGTATGATGGTCTGTTTGgagcaaacacaaacaacaaactgAGATTGTTGTCCTTGCAGTTTGTTCAtcacatttgtgttgtGTGTCCAGATAATAACAAGCCCCTGGGTCTTATGCTTCTCAATGGATTAACAAAGCTTATCAATGAATACAAAGAGGAAGATTCTGAGGTCAGGCTGGCTATCCAGGAAGCTCTTTCCATGATGGTGGGGGCCTACGCATCCCTGCAGGGGGCCCTGCTCAATCTCATGGAAGCTCTTGTTGCTGCTTATATGGGAAAGCCTGAAGTGCAAGTTCGTCAAGTAGCGATGAAATTTGCGAGTACAGTGTTTGCTTCTGACCACGTACCCTCCAGATACCTCTTGCTGCTGGCTGCTGGAGATCCCCGTGAAGAAGTGCACAGTGAAGCCCAGCGTGTCCTGAGAGCCGTTCCTGCCCAGGGTACAGAGAAGGAAGGCTCTAAGCCCATGCCCTCCTTCCCAGACATGGTCAGCTACATTCAGGAAAAGGCTTCACAGAGAATGAAGACCCCTGCCAAGTACATTGTTGGAAATTCCACCCTTCCTTTTAACCCTTCTGCATTTGGAGAGATTATCTTGTACCTGCGGATGTGCCTTGCTCACAGTGCAGGAGCGATGCCTACCTCCCAGAGCCTGGCTGACATGCAGGATAACGCCCCAGCCATTGCGCGCTATGTGCAGAGTCTGCTGTGTGAAGAGcagctctcctcctcccccaagGGAGGGGAGTCCAACCCTGTGCAGGTTTATATTGAACTGCTCCAGCAGCTGCTGTCAGCCATTGGTGgcGTTCCAGTGATGTACTGCCTTTTAGAAgtggtgtctgtctgtccccaaAAGCTTGCACCTAAATTCATTGACAGAATTGACTGGATCAAGaGTCTGATGAACACTAACAAGGAAGACATGCGTGAGCTTGCAGCCCAGCTGTATGCGGTGGTTGTGTCGACCATGTCCGGGAATGAATTGAAGACAGCTGTGCAGAACCTCATCAAGATCACGAAGGACACCCATAACCCAGAGACGCAGCATGGAGCAATTTTGGCATTGGGTTACATGGTTGGCCGTTACCTGAGCAAAAGGAAAAGTTCAACAGACTCTCAAAACAAGGAACAGCCAATGAGCACAAACCTGCAGGAAGATGAAGAGCTGATCTGTTCTGCTACAAAAACTATTGGTTCGTTTCTGGAGAGCAGCTCTTCTCTCTTGACCATTGCTGCCTGTACAGCCCTGGGGGAGATCGGCAGGAACGGTGCTCTGCTGATCCCCAGTGAGGGCTCAGGCTTCACTAAACTGCACGTGGTCGAGAACCTGCTGGCTCGCATAACCTCAGGGAAAGAGAATTCAAAGATGAAGGAACGTGCCATACAGACACTGGGTTACTTCCCAGTCGGAGATGGAGAGTTTCCTCATCAGAAGAAACTGTTGCAAGGCCTGATGGACTCAGTGGAGGCTAAACAGGTGGAGCTGCAGTTCACCGTTGGGGAGGCCATAACCAGTGCTGCTCTGGGCACCAGCTCTGTCGCAGCACGAGACGCCTGGACCTGCAACGAAGAGGAGTACATTGCTCCCACTGATATGAAGTCCAATGATGTGGTGCCCTGGGTTCTGAACAGTATCCTCAGCAAACATATCAACAGCCCCAACCCCCATGTCCGCCAGGCCTCCTGCATCTGGCTGCTCTCCCTGGTGAAGAAGCTCAACCAGCACAAGGAGATCAAGtcgCACCTGAAAGAAATCCAGACTGCATTCATCTCCATCCTGTCTGATCCTGATGAGTTGAGCCAGGATGTGGCGTCCAAAGGCCTTGGGCTGGTGTATGAACTAGGCACTGAACAGGACCAACAGGAGCTGGTCTCCACACTGGTGGAGACGCTGATGACGGGGAAGAGGGTTAAACATGCTGTCTCAGAGGACACTGAGGTTTTCCAAGGTGGTTCCCTGGGCAAAACCCCTGATGGCCAAACCTTGTCTACCTACAAAGAGCTGTGTGCGCTGGCCAGTGACCTCAACCAACCGGACTTAGTCTACAAGTTTATGAACCTTGCCAATCATCATGCAATGTGGAACTCCAGAAAGGGTGCTGCCTTTGGATTCAACATGATAGCAGCTAAAGCTGGGGAGCAGCTGGCCCCTTACTTATCCCAGCTCGTTCCCCGTCTCTACCGCTATCAGTTTGATCCTAATCTTGGAATCCGACAAGCCATGACCAGCATTTGGGATGCTCTTGTTACAGACAAAACAGCGGTTGATAAATATCTGAAAGATATTCTTCAGGATGTTATATCCAACCTCACAAGTAATATGTGGAGAGTCCGGGAATCAAGCTGCTTGGCTCTTAATGATTTAATACGTGGAAGACAACTGGATGACATCATTGACCAACTCCCTGAAATCTGGGAGACCTTGTTCAGGGTGCGGGATGACATCAAGGAATCTGTCCGGAAGGCAGCTGATTTGACCCTGAAAACGCTTAGTAAGGTGTGTGTGCGGATGTGCGAGCCCTCCAGTGCCGCGGCGCAGCGGACAGTCGCGGTCCTCTTGCCCTGCCTGCTGGACAAGGGCATCCTGAGCAACGTGTCCGAGGTCCGAGCACTCAGTATTCAGACCCTGGTGAAGATCAGCAAGAGTGCCGGCTGCCGGTTGAAGCCCCACGCCCCCAGACTGATTCCGGCTCTGCTGGAGTCCCTCAGCGTGCTGGAGCCGCAGGTCTTGAACTATCTGAGTCTACGAGCCACTGAGCAAGAAAAGACCGCAATGGAAACCGCAAGACTCAGTGCAGCCAAGTCTTCTCCTATGATGGAAACCATTAACATGtGCCTGCAACACTTGGATGTGTCAGTCCTAGGAGAGCTCATCCCAAGGCTGTGTGACCTTCTGAAGAGTGGAGTTGGTCTGGGCACAAAGgGAGGTTGTGCCAGTGTCATTGTTTCACTGACCATCCAATGCCCTCAGGACTTGACACCTTATACAGGCAAGTTGATGAGTGCGTTGCTGAATGGGTTAAATGACCGCAGCAGTGTTGTACAGAAATCGTTCGCTTTTGCCCTGGGACATTTAGTCCGGACTGCAaaggacagcagtgtggagaagCTTCTGCAGAAGCTCAATGACTGGTACCTGGAAAAAGAAGAGCCGATTTATAAGTCTTCATGTGCACTGACGGTGCATGCCATTGGGCACTACAGTCCGGATGTGCTGAAGAGCCACGCCAGCCAAGCCTTGCCCCTGGCCTTCCTGGGAATGCACGAGGTTTCTGATGAAGAGAAGGGGGAGAACGCGGACTCCAACCTCTGGTCGGAGGTCTGGCAGGACCATGTGCCTGGAAGCTTCGGTGGCATCCGACTGTACATGACCGAGCTGATTGCCATCACCCAGAAAGCACTGCAGTCCCAGTCCTGGAAGATGAAAGCCCAGGGAGCGGCTGCCATGGCATCTATCGCCAAGCAGCAGACGGGCTCCCTGGTGGCTCCTTACCTGGGCATGGTGTTGAGTGCCCTGCTGCAAGGCCTGTCTGGGAGAACGTGGGCTGGGAAGGAGGAATTACTGAAGGCTATTGGAACTGTGGTATCTGCATGCAGTGGAGAGCTGAAGAAATCCGTGCCAGGCCAGCCCAGCATCCCCGAGATCATCGAGCTGGTGCTGAAAGAGTGCCGCAAAGACAACCTCGTGTACAAGATGGCGGCTCTGAAATGCTCTGCAGATGTCCTACACTCTGCCCAGGAGGACCGCTTCCAGGAGTTGGCAGACATTCTGATTCCTTTAATAAAAAAGAACTCCCCGACCAGTGCGCTTTCCCAGAAGgaaaaggaggaggaagacgaggAGGATGACATTGACGAGAAACGGAAGGAGTTGAAGACTGAGGCTTTGCTTTGTGCCTTTGAAACTCTTGGCAAGGCCTGGCCTAAAAACTCGGCAACACAGGAGCGGTACCAGTTGGAGCTGTGTCAGCTGATGTGTGAGAGACTGAAGCTCAGCACATGGAGGGTACAGCTTGGAGTTCTCCAGTCCATGAAGGCTTATTTCCAAGGGTTGATACTTTTGGAAAAGGACCAGCAAGATTCCCCTGCATTGACAGAAATATTGACAGAAAGTTGCACTGCAATCACATTTCCATTAGAAAACAAGAGCTATTCCTCTGTGAGGACTGAAGCCGTATCCATTGTGGAACTACTAATAAAGAGAGTGGATGAGAATGGACAGTGGGGAAGCTTGACCTCCAAGAGCAGAGATCAGCTGGTGAACTCCCTCACGCCCATGGGGTCGGACAGCAGACCGGAGCTGAGGGAGAGGGCTGCGGAGCTGCGGAAGCTGATCCAGAGGCACTCGTGAACTGGGATTCCATCATCCTTCCTTCTAGTCTTGACATGCAGATTCGCTTACTCTCCAAGACATGTGGCTGGCCAGTCTCCATTGCTACGTGCCCGATTTCAATGTTTTTGGGCTTTTTTCAGCTAAACTGCAGGCTCAAAAAGTTTTGCTATTAATATTTGATGTTCCCAtgtatgtaaaagaaaaaaaattaaatgctcaAGGCTGTTACCGTACGATGAATAAATGGCTTAGAATAGGAAGTTAATATTCCCTGGAACTTCCTACATCTGGAAccgttttaaaataaagctgtgtTTTTGCAGATGAGGGGTTAGCTTGTTAGAGATTTAGAAGGTGAGGTGGACTATGGGTAATGAGTGCAACCACAGCCACGTCAGTTGCAGTGTCATTTACAGAGTTCAATGTGGTATATTCAATGAAGTATAACAACTCAGTTACAGTATTTTATACTCTGCATCCCACTGCAATTAAATTGACCATACCtatgaaaataatttttaatcctatgataaaatgaaatgtttaattgtggATCTAATTGCCATATTTAATAGTTATTGCAccatgttcattttaaacactgtatTGTGCCCACAATGGGCCCATGTTGCTGCTGCAGTTTGCCACTTTAACTGCTTTACTGTAGTGGAGAATTGGAAAAGGCCAGCTTTTTGGAAAAGTGATTTGTTCAGGAAAGATTTTAGTGCAATGTCTCTTGATAAATGATACTACTCCACTTGCATGTTTTAAAGGTGTGTCtataattgaattttcaaaaCTAAAGTAACCATACCAAAGTTGGTAAATAGAAGAGGCATGCACTATCTTTTGAATTTCTTCTTGTGAATTTGTCCTAAACAAGATGTATGaataaaattgctttattgtgaacctata

Function

GO: NA

KEGG:

id description
K11886 ECM29; proteasome component ECM29

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115794 lncRNA downstream 58533 20817675 ~ 20822960 (-) True G92836
TU115796 lncRNA downstream 59498 20820466 ~ 20821995 (-) True G92838
TU115778 lncRNA downstream 147071 20676659 ~ 20734422 (-) True G92823
TU115776 lncRNA downstream 205215 20672065 ~ 20676278 (-) True G92822
TU115751 lncRNA downstream 246613 20634672 ~ 20634880 (-) True G92800
TU115857 lncRNA upstream 214515 21128471 ~ 21128999 (-) True G92892
TU115940 lncRNA upstream 1060028 21973984 ~ 21974289 (-) True G92943
TU115945 lncRNA upstream 1131024 22044980 ~ 22124742 (-) True G92947
TU115948 lncRNA upstream 1179009 22092965 ~ 22093405 (-) True G92948
TU115953 lncRNA upstream 1238416 22152372 ~ 22152578 (-) True G92953
AMCG00017751 mRNA downstream 107069 20748155 ~ 20774424 (-) True AMCG00017751
AMCG00017748 mRNA downstream 140098 20690221 ~ 20741395 (-) True AMCG00017748
AMCG00017749 mRNA downstream 213821 20653145 ~ 20667672 (-) True AMCG00017749
AMCG00017737 mRNA downstream 253510 20626084 ~ 20627983 (-) True AMCG00017737
AMCG00017741 mRNA downstream 259388 20620406 ~ 20622105 (-) True AMCG00017741
AMCG00017753 mRNA upstream 215401 21129357 ~ 21136560 (-) True AMCG00017753
AMCG00017759 mRNA upstream 382091 21296047 ~ 21304123 (-) True AMCG00017759
AMCG00017758 mRNA upstream 402511 21316467 ~ 21369489 (-) True AMCG00017758
AMCG00017757 mRNA upstream 485345 21399301 ~ 21403260 (-) True AMCG00017757
AMCG00017763 mRNA upstream 1395293 22309249 ~ 22366047 (-) True AMCG00017763
TU115494 other downstream 1462137 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 1462137 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 2418317 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 3407154 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 4850588 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 2404170 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 2404170 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 2404170 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 5098705 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 5098705 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001856 False 6368 mRNA 0.46 49 NC_007112.7 19562752 ~ 19599242 (-)