RNA id: AMCG00017753


Basic Information

Item Value
RNA id AMCG00017753
length 1032
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00017753
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 21129357 ~ 21136560 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAAAAGAGAACAGGCTAGCAGCCAATCAGGGAGGGCCCGGGGCTGCCTATCGGATGTTTGATATAATGGAGGGCTTGATTGATAAACTCAAACTGTTGGATTTCGATGAACAGGTGGTTAGAAAGTACAACTTGCCAGCCATATCGAGGCATTACTTCGCCCTCCCGACAAACTGCGGTGAACAGTTCTCCATGTTCAACATGATCGCATTTTCAACCTGTCGGCCCTTCAAGCAGCCAGATGAATCTGATGACCCCAACGACACAGTGGCCAGCATCCAGGCAGAGCTGCGGGCCTTAGGTGGAAGAGTGGATTTCCCTCCTTCCaaactgaaggcaggatttggGGAGCACGTGTGCGATGTGTTGGCCCAGTTAGCAGATGAGGCCTTAAAAAGGACGAGATTCTGCTGGAAGGAGCCGAGCTACCCCACAGAGGAGCTGGAAGAGGAGTCTGTGACGGAGGACGACACAGAGGAACcggatgattatgaagatgaaaatCTGATAGACCTGGAAGCCCTGAAGGCCAGGACCAATCAGAGTACGCAACAGAATGGAGCTTGGAAGTGGAGCGAGTTCAGTTTCTCTATGCTGGGAGTAAGCATTCTGCATTTACCTTCCCAGGACTGGCGAATCCATGTGGACCTAATGAACGGACACAAAGAGGTCATTGAGTCCTCGTTGAAAGAGACCAAGgGTCACATCACAACCCTGCAAAAAGAAATCGTGAAGACACTAGGGAAATTGAGCAGCAGGGAGAAATTCCTGAACAATGAGCTGGAGCATTTAGTGACGGAATACCAGGCTGCTCAgcAAAGGAAGTGCGAGAGTGACAGAGCGGACCAGGGTGCTGGCGGAGTTCCTGTGCTGAAAATTAAGCAGAGCCTAGCTGAAGTCAAGAAAGAAATTCATAAGATGGACATGAGGATTGGACTGGCCCAGCAAATGCTAATGAAGATTCAGATGACCAGGGAAAGGCGTGCCACCTGGGAGAGATACCAGGGGAGGGCACAACCTCCCCGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115857 lncRNA downstream 358 21128471 ~ 21128999 (-) True G92892
TU115794 lncRNA downstream 306397 20817675 ~ 20822960 (-) True G92836
TU115796 lncRNA downstream 307362 20820466 ~ 20821995 (-) True G92838
TU115778 lncRNA downstream 394935 20676659 ~ 20734422 (-) True G92823
TU115776 lncRNA downstream 453079 20672065 ~ 20676278 (-) True G92822
TU115940 lncRNA upstream 837424 21973984 ~ 21974289 (-) True G92943
TU115945 lncRNA upstream 908420 22044980 ~ 22124742 (-) True G92947
TU115948 lncRNA upstream 956405 22092965 ~ 22093405 (-) True G92948
TU115953 lncRNA upstream 1015812 22152372 ~ 22152578 (-) True G92953
TU115955 lncRNA upstream 1083961 22220521 ~ 22220780 (-) True G92955
AMCG00017752 mRNA downstream 215401 20881493 ~ 20913956 (-) True AMCG00017752
AMCG00017751 mRNA downstream 354933 20748155 ~ 20774424 (-) True AMCG00017751
AMCG00017748 mRNA downstream 387962 20690221 ~ 20741395 (-) True AMCG00017748
AMCG00017749 mRNA downstream 461685 20653145 ~ 20667672 (-) True AMCG00017749
AMCG00017737 mRNA downstream 501374 20626084 ~ 20627983 (-) True AMCG00017737
AMCG00017759 mRNA upstream 159487 21296047 ~ 21304123 (-) True AMCG00017759
AMCG00017758 mRNA upstream 179907 21316467 ~ 21369489 (-) True AMCG00017758
AMCG00017757 mRNA upstream 262741 21399301 ~ 21403260 (-) True AMCG00017757
AMCG00017763 mRNA upstream 1172689 22309249 ~ 22366047 (-) True AMCG00017763
AMCG00017776 mRNA upstream 2033013 23169573 ~ 23194544 (-) True AMCG00017776
TU115494 other downstream 1710001 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 1710001 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 2666181 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 3655018 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 5098452 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 2181566 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 2181566 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 2181566 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 4876101 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 4876101 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile