RNA id: AMCG00017777


Basic Information

Item Value
RNA id AMCG00017777
length 1799
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00017777
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23264034 ~ 23279042 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAGAAAATAAGAGCTAAATCTTTTCGAAGACCTTACCTGTCGATTATCGAGCCAGCACGCAAGCGTCAAAAGCGTGCGTTGTGACGTCTTTACGTAGGATGTATGGAGTGAGAGAGTGTATGATGGCGCAAACCAAGAATTTATAGAGAATGCTTGTTCAAGATTTTAGTTAATTAGAAAAAggtacacattttttttttcttggcaagAGCCAGCTCGGACAGTCGGCGACCAGGATGGATCCAGCCCTGCTCAGAGAGACTGAGCTCTTTAAGAAGCGAGCCCTTTCCACACCGGCGGTGGAGAAGAGGTCTGCCCACTCAGAATCCTCTTCATCCAAAAGGAAGAAGGCCAAGCACGACCATGGTGGATCTTCAGGGTCCAAGCACGGAGCAGaatccAGTAATGGATCATTTAACCTGAAAGCATTGTCTGGGAGTTCGGGATACAAATTTGGAGTTCTGGCTAAGATCGTGAATTATATGAAGACACGACATCAGCGTGGAGATACGTATCACCTGACTTTGGAAGAAATTCTGGATGAGACGAAATTGCTGGATATCGGtttgaaacagaaacaatggCTAATGACTGAGGCCCTAGGCAGTAACCCCAAGATTGAGGTGCGTGATGGAAAATATGCCTTCAAGCCCAAGTACCACCTGAAGGACAAGAAAGCGCTGCTGCGGCTGCTAGACAAGCATGACCagctggggttggggggggttcTGCTGGATGATGTGGAGGAGGGACTGCCCAATGCACAAAAAGCCATCAAGGCTTTGGGTGACCAGATCATTTTCGTGACGAGACCAGACAAGAAAAAGATCCTGTTCTACAATGACAGAGACTGTCACTTTGTGGTGGATGAAGAGTTTCAGAAGCTGTGGCGGAGCATTCCAGTGGATTCCATGGATGAAGAGAAGATCGAAGATTACCTGAAGAGGCAGGGTATCTCTTCCATGCAGGAGACGGGACCAAAGAAGATAACACCGATCCAGAAGAGGAAGAAACCTTCTCAGAAGAGACGTTTCAAGACTCACAACGACCATCTTGCGGGGGTTTTGGAAGACTACTCCGAGGGTGTCCCAGGCAAGAAGTGAACAAAGACTGTATTTTACCCATCAGGCTGCAGGAGGGACTGACTCATGCAATCCAAAAGAGGAGGGAAACAATCTTCTAAATGATCTTGGTTTTGGCTCCAGGGTTTGGAACGACTCAGCCAAGATCATGGCACtggcatttattttactgtataacCTGGTTCAGAGACATGCAAATGTGAATCTCTATATAAtagtgtttttcctttcatgcCAGCATTCAAAAGACAATAAACTGGATATGATTTGAAAGAATGATTAACCTTGTTCCAAGGAATCTGCATAGATTATCATCCGGTGCTTTATTattgtgcttttcttgttttctgagCACATAGTGTATGCTGGATATTTTACCTGAACATCTTTGAAagaatatttgtaataaaaaggATGGGGTAAAAtaaccctttttgttttaagagaTGTCGATATGTTTTTCCTTGGAGGATGTAGTGACTCAGAGAGGTCTTTAATTATGAATCGGGATCAAAAAGATCAATTCAAATCCAGCGTCttgcactttttaatgacctgTTTGCAAAGCAGTTAACCACAAGTCCTCGAGGTGCTCATTGGATTTCTTATCCAAAGACTGGTACAGACTCAAGACTATAATAATGAGTCCAGATTTGCTTTATTTCACATAGTGTCTCCCCTGGTTTGTCTTGTTTGCTACTTTGAAAAAGAGGGAG

Function

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0005673 transcription factor TFIIE complex cellular_component

KEGG:

id description
K03137 TFIIE2, GTF2E2, TFA2; transcription initiation factor TFIIE subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116067 lncRNA downstream 424600 22839151 ~ 22839434 (-) True G93038
TU116062 lncRNA downstream 459650 22801371 ~ 22804384 (-) True G93033
TU116057 lncRNA downstream 485935 22777804 ~ 22778099 (-) True G93028
TU116052 lncRNA downstream 572502 22690675 ~ 22691532 (-) True G93026
TU116050 lncRNA downstream 574357 22686424 ~ 22689677 (-) True G93024
TU116128 lncRNA upstream 11290 23290332 ~ 23290681 (-) True G93090
TU116130 lncRNA upstream 15777 23294819 ~ 23295369 (-) True G93092
TU116205 lncRNA upstream 16758 23295800 ~ 23296246 (-) True G93159
TU116222 lncRNA upstream 47483 23326525 ~ 23329744 (-) True G93165
TU116235 lncRNA upstream 165169 23444211 ~ 23540120 (-) True G93173
AMCG00017776 mRNA downstream 69490 23169573 ~ 23194544 (-) True AMCG00017776
AMCG00017763 mRNA downstream 897987 22309249 ~ 22366047 (-) True AMCG00017763
AMCG00017757 mRNA downstream 1860774 21399301 ~ 21403260 (-) True AMCG00017757
AMCG00017758 mRNA downstream 1894545 21316467 ~ 21369489 (-) True AMCG00017758
AMCG00017759 mRNA downstream 1959911 21296047 ~ 21304123 (-) True AMCG00017759
AMCG00017782 mRNA upstream 17646 23296688 ~ 23313459 (-) True AMCG00017782
AMCG00017780 mRNA upstream 39051 23318093 ~ 23321930 (-) False AMCG00017780
AMCG00017781 mRNA upstream 51902 23330944 ~ 23345917 (-) True AMCG00017781
AMCG00017787 mRNA upstream 76564 23355606 ~ 23388495 (-) True AMCG00017787
AMCG00017789 mRNA upstream 132619 23411661 ~ 23422126 (-) True AMCG00017789
TU115494 other downstream 3844678 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 3844678 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 4800858 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 5789695 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 7233129 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 39084 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 39084 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 39084 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 2733619 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 2733619 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000451 True 1287 mRNA 0.42 8 NC_007112.7 22851746 ~ 22872274 (+)