RNA id: AMCG00017782


Basic Information

Item Value
RNA id AMCG00017782
length 4507
RNA type mRNA
GC content 0.45
exon number 21
gene id AMCG00017782
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23296688 ~ 23313459 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAACACAGAGACGTCTCTCATAGCCTCTAGCTTGCCTGGATGTTTACAATCACAGCAGCACCACtgcatgaaagaaaataaactgaggAGGGGGGAACTGAGCACGTAGAGTACCTTTTGTCTGGAGAAAACCAGTGAACTTGGCACCTCATAGCTGCTGCTTTTCTGATGCTCCCCTGTTGAACAGTCTATTCTgaaggcttttgtttttgtgagggGTGATTAAAAGACACCATCAGTTGTACAACCATGAGGAACCCATACGCACACATTGTAGAACCTCTGGACCCAAAAGAGCCAGCCAAAAAGATCTACAACTTGTGCAAGTTGGGGGATCCCAGATACGCCCGCCTTCCGTTCTCCATCCGGGTGCTGCTAGAAGCTGCGGTCCGCAACTGCGATGAGTTTCTGGTGAAGAAGGACGATGTGGAGAGCATTCTCAACTGGaaggagacacagacacagagtgtTGAAGTGCCTTTCAAACCTGCAAGAGTCATTCTGCAGGACTTCACTGGAGTGCCTGCTGTGGTGGACTTTGCTGCCATGAGGGATGCTGTAAAGAAGCTTGGGGGAGACCCGGAGAAGATAAATCCAGTGTGTCCGGCTGACCTGGTGATTGACCACTCCATCCAGGTGGACTTTAACAGAAAGCCTGACAGTCTACAAAAGAACCAGGATCTGGAGTTTGAAAGGAACAAAGAGAGATTTGAGTTCCTAAAGTGGGGCTCAAAGGCTTTCCACAACATGAGGATAATCCCCCCAGGCTCTGGAATAGTTCACCAGGTCAATCTGGAGTACCTGGCCAGAGTGGTGTTTGACCAGGATGGCTTCTATTACCCAGACAGCCTGGTTGGCACTGATTCCCACACCACCATGATCGACGGACTAGGCGTGCTCGGCTGGGGTGTTGGTGGAATTGAAGCTGAAGCTGTGATGCTGGGTCAGCCCATTAGTATGGTCCTTCCAGAAGTAATTGGCTACAAGCTGCTGGGGAGCCCAGGTCCTTTAGTGACATCGACAGACATCGTCTTAACAGTCACCAAGCACCTAAGGCAGGTTGGCGTGGTGGGAAAGTTTGTGGAGTTCTTTGGCCCCGGTGTGGCCCAGCTCTCTATCGCTGACCGGGCCACCATTGCCAACATGTGTCCAGAGTACGGAGCCACAGCCGCTTTCTTCCCTGTCGATCACATCAGCGTCAAATACCTGGAGCAAACAGGGAGAGATGAAGATAAACTGAATTACATCACCCAGTACCTCAAAGCAGTAGGGATGTTCAGGGACTTCAACGACTCGTCCCAGGATCCAGACTTTACAGAGGTAGTGGAGCTCGACCTCAGCACTGTGGTTTCCTGTTGTAGCGGCCCCAAACGGCCCCAGGACAAGGTAGCGGTGACAGATATGAAGAAAGACTTTGAAAGCTGCTTAGGAGCCAAGCAAGGATTTAAAGGCTTCCAGGTGGCGCCCAAACATCAGACTGTTTCAGCCTCTTTCGAGTACAACGGCAAAGAGTACAAGCTGTCACACGGGTCCGTGGTAATTGCAGCCATCACCAGCTGCACCAACACCAGCAACCCCTCCGTGATGCTGGGTGCAGggCTGTTGGCCAAGAGAGCTGTTCAACAGGGGCTCAGTATGAAGCCGTACATAAAGACAAGCCTGTCTCCTGGCAGCGGCGTTGTCACCTACTACTTGAAGGAGAGTGGAGTGATGGATTACCTCTCTCAGCTCGGATTTGAAGTTGTGGGCTATGGCTGCATGACCTGCATCGGGAACAGCGGCCCTCTTCCAGAGCCAGTAGTGGAGGCCATCACTCAGAATGATCTCGTGGCTGTGGGAATCTTGTCTGGCAACAGGAACTTTGAAGGCCGTGTGCATCCCAACACCCGCGCCAACTACCTGGCCTCGCCGCTATTGGTCATTGCCTATGCCATCGCGGGCACCGTGTGCATCGACTTTGAGACCGAGCCTCTGGGCATCAACCCTCAAGGAAAAAAGATCTTTTTGAGGGACATCTGGCCATCCAGGCATGAGATCCAGGAGGTGGAGCGAGAACATGTAATTCCTGTCATGTTCAAAGAGGTCTATGAGAAAATTGAGAAAGTGAACGAGCGATGGAATGAGTTAAACTCTCCCTCAGACAAGCTTTACACCTGGAATCCCAAATCGACCTACATCAAATCTCCACCTTTCTTTGACAATCTGACTATAGACCTTCAACCCCCAAAATCAATAACTGATGCATATGTGCTGCTGAACCTCGGAGACTCAGTGACGACAGACCATATCTCCCCCGCTGGGAATATCGCACGCAACAGCCCCGCAGCTCGCTATCTGACGGGCAGGGGATTGACTCCTCGAGAGTTCAACTCTTACGGATCTCGCCGTGGAAATGATGCTGTCATGGCAAGGGGCACCTTTGCAAATATCCGCCTCTTCAACAAGTTCCTGAATAAACAGGCTCCTCAGACACTACACATACCTTCTGAAGAAACGTTGGACGTCTTCGATGCTGCTGAGCGATACCACCAGGCCGGCCTTCCCCTCCTCATCCTGGCAGGGAAGGAGTACGGCTCTGGCAGTTCCCGAGACTGGGCCGCCAAGGGACCTTTTCTTCTGGGCATCAAAGCAGTGCTGGCTGAGAGCTATGAGCGGATTCACCGCAGTAATCTGGTGGGCATGGGCGTCATCCCCCTGGAGTATCTCCCAGGAGACACGGCGGAGTCCCTGGGCCTCACAGGGAGAGAGCGCTACACCGTAGTCATTCCTGAGAAGCTTACACCCAGGATGATTGTTGACATCAAGCTGGACACAGGGAAGACTGTGAAGGCCCGCATGAGGTTTGACACCGATGTGGAGCTCACATACTTTCTCAACGGGGGAATCCTCAACTACATGATCCGCAAAATGCTGGAGAAGTAGAGACGGAGCTTTCAGGTGGAATTAAAATACCCAGTCGGAACTAACAGCCTTATTCCAGGAGACCGCACACATAAGAGCATCAGAAAAGCATATTCTCTGTTTATTCTGTCTATTTTTCCTACTTCTTTCTTCTAGGgcacagaaaatgtttaaactgaagGGAATTTGTCATCTTCTTTTCAATACAATATAGACATATTATGGttattttgtcagtttgttGGCTTTATACCCTACCTCACTAGAGtttaccacaaaacaaaacaaaattcttAGGTCAAACAAAGTCCTCTGTCCTGctgcactttttcttttgttgggGATCAATCCTACCTTGTCCgtcagtgatatctttcttgtgtGGGTGAAAATGTTACAGTTGCATTTGGCCTGCCTTTTAACTCCCTTTTTAAGATGGATAAGAAAGAAATTATGCATCTGTCAACTGTAAAAGCAGGTGGCAATACACACCTGCGTTTACATCAGCTCTGAGATCCTCTATGCTAGGATTTAATATGCTCAAGATGAATTTATGAAATACTGGTAATCATATTTTGTGCCACCTGGAGATGCCAGcaaaatgtgacttttttttttcatcctcttATGGTATGATGTGCTGCTTTTCTTCAATTAATCATGTTAATCATATTACTGATAAACTGTAGATTGATGGTATGTTTCTAACCTGAAGccagattaaatgtattttttgaatcatttcttcccccttttttgtattatttcctaAACCTTTGTCAGAAGAGTTGTTTCTGTACTACTCCTACCCACAGGTTATATTTAACAGGTGACAGGATCCCGTAACACGACTTTGATGGGGGGAGGCTAGTCCAGAATGACACTACACCAGCACATGTGTTCTGCTGAAAGGATATTCTGTTCTTGAAAATTAGTTTATGCTTTaactaaaatgatttaaatgtaaaatgtatattctgttCTTATGTAGATTGCATAAATTTAAAAGACATGGAATTTGGGACTGGAGTATTTTAGTCAATTATGACAAGACAACACAGATGCATCTTAATTTGAACTTTTCCAGAATAttggaataataaaataatgtaaacgtgattttttttaaaatttatttttcctttgagatgtatttttaaaggaattccAAACAGCATGTTTTCTTTCAAGCCCATTTCATTCTGAAAACTTGCTGAAATCTCTTGAATGCCTTAATTCTTTGTCTTGAACCTTTATAAAATGCTTGGCTTCATTCTCAAACTTCTGAGGAGGTTCTGAGATAGTCATTTTGATCTGGAAGTTTTTTACAATTAAGTACAGGCTTCTGTACTCACCACAGAATTTAACAATTTTCTTTTATGTGATTCAACTTGTCATAATAGCCCAAAAGTAGTCAAttttatggaaatgcaattttagAATTTGTCTCTGGTTCCCTGAATAtccaacattaaatacaaaatatcaggaatgtcatattttttgttttaatccaaaaGGTATGAAGAGATTACAGAAatgtggtaaaaaaataaatttttaaaaagcatgtaaaaaaacaaaaagttccTAAGTCCCTTTTCT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K01681 ACO, acnA; aconitate hydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116205 lncRNA downstream 442 23295800 ~ 23296246 (-) True G93159
TU116130 lncRNA downstream 1319 23294819 ~ 23295369 (-) True G93092
TU116128 lncRNA downstream 6007 23290332 ~ 23290681 (-) True G93090
TU116067 lncRNA downstream 457254 22839151 ~ 22839434 (-) True G93038
TU116062 lncRNA downstream 492304 22801371 ~ 22804384 (-) True G93033
TU116222 lncRNA upstream 13066 23326525 ~ 23329744 (-) True G93165
TU116235 lncRNA upstream 130752 23444211 ~ 23540120 (-) True G93173
TU116417 lncRNA upstream 594116 23907575 ~ 23910679 (-) True G93324
TU116446 lncRNA upstream 721237 24034696 ~ 24037610 (-) True G93350
TU116452 lncRNA upstream 730735 24044194 ~ 24046369 (-) True G93355
AMCG00017777 mRNA downstream 17646 23264034 ~ 23279042 (-) True AMCG00017777
AMCG00017776 mRNA downstream 102144 23169573 ~ 23194544 (-) True AMCG00017776
AMCG00017763 mRNA downstream 930641 22309249 ~ 22366047 (-) True AMCG00017763
AMCG00017757 mRNA downstream 1893428 21399301 ~ 21403260 (-) True AMCG00017757
AMCG00017758 mRNA downstream 1927199 21316467 ~ 21369489 (-) True AMCG00017758
AMCG00017780 mRNA upstream 4634 23318093 ~ 23321930 (-) False AMCG00017780
AMCG00017781 mRNA upstream 17485 23330944 ~ 23345917 (-) True AMCG00017781
AMCG00017787 mRNA upstream 42147 23355606 ~ 23388495 (-) True AMCG00017787
AMCG00017789 mRNA upstream 98202 23411661 ~ 23422126 (-) True AMCG00017789
AMCG00017788 mRNA upstream 110232 23423691 ~ 23430213 (-) True AMCG00017788
TU115494 other downstream 3877332 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 3877332 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 4833512 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 5822349 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 7265783 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 4667 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 4667 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 4667 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 2699202 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 2699202 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00068478 True 2884 mRNA 0.52 21 NC_007118.7 71463106 ~ 71486162 (-)