RNA id: AMCG00017788


Basic Information

Item Value
RNA id AMCG00017788
length 4085
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00017788
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23423691 ~ 23430213 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGGAGTCAGCAGTTCGCAGTCTCTTGTTGTTTTGAGGATTTTCGTTTCATTTTCTGGACTGGTAAGAACaacttttgtttgatttggtcACTGGGTGAAGCTTTAGTATTGGTCTTTCGGACGGCTCGCAAAGGGATGAAATAAAAAGGTGTAGCAACAGTTCTGGGTAACGTGGAATAGTCAGCCTTcttgacttttgttttcttcgtTTTAGTGTCGccttcttgtagcgcagatttccgcagttctacGCAGATATGCAGAATCtctccgctcccattggtggagccgcgcagaacttcTGAGATCTGCGCAACAAGAGCAGACACATGTTCCGAGTTGTCCGACCTCCGTGAAAGTGACTTGATCGTGCAGTTTGGCGTGTTTTAATGATCGCTTTATACTAAGTGTCATTTTTGCAGTGGGTCCTAAAGCGGAAGAATACGGGGGATTTCATTTACAATCTAATCAATCTTAACTTAAAAATCGCATGAGATTTAAAACGAGTCAACCGTATAGAagctttatttcctttttaattagtCCTAGCCTATACATCCTTCATCAGGTTAGGCAGACACGATTAAACTGGAGGATGCCGTGTAGTCAGAACTGTTGCATGATCttgaagttttattttctctctcgtAGATAAAACATGGCGTCAATGGAGGTGATTCAGCAGCAGAATGTGGTAGCTAGAGTTGCTAACCTGCCCCTGGTTAGCTCTACCTATGACATGGTCTCCAATGTATATTGTAACACTAAGGAGAATCACCCCTACATCAAGTCTATGTGTGAAGTGGCAGAGATGAGTGTGAAAACCATTACTTCTGTTGCTCTTACCAGTGCCATGCCTATCATCAACAAACTGGAGCCTCAAATTGCAGTAGCAAATGACCTGGCTTGTAAGGGTCTGGATAAAATTGAGAAGACTTTGCCAATCCTTCATCAGCCATCTGACCAGGTTGTCGCCAATGCTAAGGATGTTGTAACTGGAGCCAAGGATGCAGTGGCCATCACTGTGACTGGTGCCAAGGACACGGTGTCTTACACCATCACTGGAGTGGTGGACAAGACCAGGGGGGCAGTGCAGGAGAGTATGGAAATGACCAAAGCGATGGTGAATGGCAGTGTGAACACAGTGATGGGCAGCCGTGTGGTGAAGATGGTGAGCACTGGAGTGGACTCGGCACTGAGCACATCCGAGTCTCTGGTGGACCACTACCTCCCCCTGACTGAGGAAGAGCTTGAGAAAGAAGCCAAAAATGTTGAAGGATTTGAAGTTTCAAGTAACAAGCCAAGCTATTACATCAGGCTGGGCTCCCTCTCGGTCAAGCTGCGCAAGAGGGCATACCACCAGGCAATTGCCAAGGTGCGAGATGCTAAACAGCGGAGTCAGGAGTCCGTTTCTCAGCTTCACTACACTGTGGATCTGattgAGTATGCAAGAAAAAACATGGACAGTGCCAACCAGAGGCTTCACAATGTCCAGGATAAACTGAACTCTTGGGTGGAGTGGAGGAAGAAGTCTGGGGACAGTGAGGTGGAAAAGAATGAGGCGGAGCAGATCGAGTCACGCACTCTGGCCATAGCCCGTAATCTCACCCATCAGCTCCAGACAACCTGCCTGACCCTGGTATCCAGCATCCAGGGTCTGCCCCAGCACATCCAGGACCAGGCTCACTCAATCACCCACGCTGCTGCCGAAATCTACAGCAACTTCAGCTCCGTCTCCTCCTTCCATGAGCTCTCCGACAGCATGCTGGCCAGCAGCAGAGGGCAACTGGGCAAAATAAAGGAATCGCTGGATGGTGTCATGGACTACCTGGTCAACAACACCCCCCTCAACTGGCTGGTAGGTCCCTTTTACCCCAGGCTGAGTCCCAACCCTCAGCCCAGCCATCACAGCGGGCAAGAGAAGAAAGGGGAAGAGATGCAGGAAATGCAACCGCTGAACTCCGCAGACTAGTGCTTTAGCTTTAAATTAACTCTGCTTTATACGCCAAGCCTGAAGTGAATTTCTCATTGGTAGGGATTTGGGGACCGGGACCTATCCTCTTTGAACTTGTGTAGCAGTTTGCAGTCTAGTACTACAGTATCATTTTGTTccttttatactgtatttttgcatataAGCAGGAGAAGGCATTCCAATTTTAATTGCAATCAGTACAAAATTGGCTAAATTACAAACACTGGCTATTTTATGTGTAAGATAAGTAAATTGAGCACATGTTAAATGGCTATGAAACTGCACTTTTGATTTGAAGGGTGTGTTGAGAGGGAAATCTGTTAAATCACTTAAGGGTGTACTGTCCCACAAAACgtaatgttctgtttttccGTCCCGTTTGTGATGTTGTAGCTGTTTGCTGCTGCATATCCTGCTTGTAGTTCACCGCATTTGTCTTCGTGCTGCTGTAGTAATGGCTGCCTCTGCTATGCTTTTTGTAGTCCCCCTCCCATCCCTACCTTTGTGCTTTTTGTAAGATGAAAATAGGTAAACCTAAGTAATCCtggaatttgaaaatgtaataaaatattcattgtCACTGCCTTTTGTGCTATAATCTGTGCCTTTTAGTTACTCGTTGGTACTATTGTGAATTTGTATGTCAATCTGTCTTGTATAACCAtttgtaataaacaaacaagcattaCATCTGTGTCATCTTACTCTTTTGGAAAGAATAAGAATTTTAAGCAATAGATAGGCTTTTCAAATTGACATTCACCAGAGTTTTCAGGCTTCCATAAAGCAGGGTTTATAACACAAGGTTTTGAAAGTGTGTTCAAGATTTTCTTGCTGAAAATTCTGCTGGATGTCCATTCTTTAATGGACTGCTATTGCTTGTACCCCAATATCCAATGAAATGGCTGCAATGAGGTCAATGGCTTGCATTAGGAAAGCACAACCCTGCTTGTGGTTGAAGATGGGTTTCACCGTGTGAACAGAATTTATTCATCCCCATTCATTCTGGTTTGATCTTTAGGAATGCAAATGCTATATTTCCATCCAATAAAAATGGCAGGGGTGAAGTAAAATTTTATGGACATTTTTCCTATTTACTGTAAGTGTAGGATGTCCCTTCTCCATCTGATGTGGTCAGCTTTTCCTCCATTTAAGTTTTGTTGCCTATAGGGCTTTTGACTCATTCAGCATGTGATCTGTAAGTTCAGTGCTGTGCACAAGGTATGgcacaataaaatgcattccaAGATTTGTATAGAAAGGTAACCATATACTTTGATTTGTTGCAATCTGAAAGCTGGATTTATACTAACCAAATGgcattttgtttgtagttttctggGAGGTGGTGTCCATTTTTGAGTTCAAAGAATGCATGCCTCTTGTGTTGCTGCTTCTGTTTTCTGGAGTTCTGGGTGTTTAACTTCAAATGCAACTTTTCAGTTCTATTTGTGGCAAAAAATATTGTACAGCTTCAAAATTTTAAATGTGGGTGCAAGTTCACGAATTCAAGTTTCCTCTAATGTTCTTGTCTCCAGTTGTGTGATGGAAAGTAGTATGAAACTGCCActggtgggaggggggggacCTATCCATACAATCCCTTTGACCAAAGTGTGAGTTGGGTGTTTTGACATGGTAACCATAGCCTTTTCAGTTGCCAATTGGTTATGCATTTGTCAATTTGATATATTCATTTTTGAGATGACCTGCAGCTTGGTTTTCACTTGGAGggttataattgtttatttgggttttattaaaagcacttgtaattttatgtatacatgcatatattttgaatgcTCTGTTTACACACAGCTTTCTTTTACATTTGACAGGTGCCCGATTTCACCATCACGGACCTTTCCTCTGAGCCAGACGACTATAACCAATCCATTGATGATCCCGATTTCTCCTTTGACTACTCCCGTGCCAATGGCCTTGTTTCACCAATCTCTCTGCCAAATTAAGCCTTTTGAccataagtttaaaaatgccTGTTGCTATATCATGAACATTTGATCATTCATTGTAGTGTGGTGTTTTGGGGTTCATTTGGTGgttttggattatttatttttttcctaataaaatatttgcagcTA

Function

GO: NA

KEGG:

id description
K17284 PLIN2, ADRP; perilipin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116222 lncRNA downstream 93947 23326525 ~ 23329744 (-) True G93165
TU116205 lncRNA downstream 127445 23295800 ~ 23296246 (-) True G93159
TU116130 lncRNA downstream 128322 23294819 ~ 23295369 (-) True G93092
TU116128 lncRNA downstream 133010 23290332 ~ 23290681 (-) True G93090
TU116067 lncRNA downstream 584257 22839151 ~ 22839434 (-) True G93038
TU116235 lncRNA upstream 13998 23444211 ~ 23540120 (-) True G93173
TU116417 lncRNA upstream 477362 23907575 ~ 23910679 (-) True G93324
TU116446 lncRNA upstream 604483 24034696 ~ 24037610 (-) True G93350
TU116452 lncRNA upstream 613981 24044194 ~ 24046369 (-) True G93355
TU116513 lncRNA upstream 835159 24265372 ~ 24266487 (-) False AMCG00017819
AMCG00017789 mRNA downstream 1565 23411661 ~ 23422126 (-) True AMCG00017789
AMCG00017787 mRNA downstream 35196 23355606 ~ 23388495 (-) True AMCG00017787
AMCG00017781 mRNA downstream 77774 23330944 ~ 23345917 (-) True AMCG00017781
AMCG00017780 mRNA downstream 101761 23318093 ~ 23321930 (-) False AMCG00017780
AMCG00017782 mRNA downstream 110232 23296688 ~ 23313459 (-) True AMCG00017782
AMCG00017790 mRNA upstream 15711 23445924 ~ 23457016 (-) True AMCG00017790
AMCG00017791 mRNA upstream 28714 23458927 ~ 23464763 (-) True AMCG00017791
AMCG00017792 mRNA upstream 38626 23468839 ~ 23519026 (-) True AMCG00017792
AMCG00017795 mRNA upstream 187467 23617680 ~ 23627418 (-) True AMCG00017795
AMCG00017796 mRNA upstream 203242 23633455 ~ 23646547 (-) True AMCG00017796
TU116215 other downstream 101737 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 101737 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 101737 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 4004335 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 2582448 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 2582448 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 2673813 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 2678847 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 4673086 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile