RNA id: AMCG00017872


Basic Information

Item Value
RNA id AMCG00017872
length 4125
RNA type mRNA
GC content 0.46
exon number 30
gene id AMCG00017872
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26112113 ~ 26193833 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGACAATTCCTTGTTGTGGTCTAACTGAATCCCACTCTTTGTTCTTGTGTATTTCTCAGCACCGCCAAGTACAATGTCCTCACATTCCTGCCGAGGTTCCTGTATTCCCAGTTCAGAAGGGCAGCAAActcatttttccttttcattgccCTCCTCCAGcaaaTCCCAGATGTTTCTCCAACGGGTCGCTATACCACTTTAGTTCCCTTGCTGTTCATccttgttgttgctgctgtgaaAGAATTCATAGAAGACCTGAAACGACACAAAGCCGATAATGTTGTGAACAAGAAGGAAACTCAAGtgcTAAGAAACGGTGCTTGGGAGATCGTCTACTGGGAGAAGGCTATGTGCTACATTGAAACCTCAAACTTGGATGGAGAAACCAATCTCAAGATCCGACAGGGCTTGCAGATTACATCAGAAATAAAAGATATTGATGCTTTAATGAGAGTTTCTGGCCGCATGGAATGTGAAAGTCCCAATCGCCATCTGTATGATTTTGTTGGCAATATAAGACTTGAAGGTCAAAGAGGTGCTCAGCTGAGGAATACCCAGTGGGTGCATGGGATTGTTGTGTACACAGGCCATGATACAAAACTGATGCAGAATTCAACACGACCTCCCCTGAAGCTGTCCAACGTGGAAAGAATAACAAACATTCAAATCCTGGTTTTGTTTGGCTGCCTGCTCGCCATATCCCTCATCTGCTCCATCGGCCAAACAATCTGGAAGGGAAAACATGGAAACGCGGCCTGGTACATGGACTTAAACTATGGTGGTGCCGCCAATTTTGGATTGAATTTTCTGACCTTCATCATTCTCTTCAATAACCTCATTCCCATCAGCTTGTTGGTTACCCTTGAGGTCATTAAATTTGTCCAGGCATACTTCATAAACTGGGACATGGACATGCATTACGAGGTGACGAACACCCCTGCTGTGGCGCGCACCTCCAATCTCAATGAAGAACTCGGCCAGgtgaaatacatcttttcagacaaaaCGGGAACCTTGACTTGCAATGTTATGCAATTTAAGAAGTGCACAGTCGCAGGAGTTGCCTATGGGCACAGTGCACAGTATGCGGATGAAGTGGGATTTAATGACCCAAGCTTACTGGAAAACCTCCAAAGCAATCATcttggacaagaagaaaaatatgaactTCTGAATGACACGGTCATTTATGATCGTCTTGCTGACAGCTCCAGGTATAAGGACATCACCTTAAAGCATTTGGAGCAGTTTGCTACAGAAGGGTTGAGGACGCTGTGCTACGCGGTCGCTGACATATCTGAGTCTTCGTACCAGGACTGGCTTCAGGTCTACCACCGCGCGTCCACAGCCATGCAGAACAGGAATCTGCAGCTGCTTGGAGCAACAGCCATCGAGGAtaaactccaggacaaagtCCCAGAAACCATTGAGACTCTGATGAAAGCTGACATCAAAATCTGGATTCTAACCGGAGACAAGCAGGAAACGGCTATAAACATAGGACACTCGTGCAAACTCTTGACAAAGAACATGGGCTTGATTGTCATCAATGAAGGGACATTGGATGGCACGAGGGAGACACTGAGTCGTCACTGCGGGATGCTTGGAGATGCTCTACGGAAGGAGAATGACTTTGCGCTCATCATTGATGGCAAGTCTCTGAAGTACGCCCTGACGTTTGGCATCAGGCAGTACTTCCTGGACCTCGCGCTCTCGTGCAAAGCTGTGATCTGCTGCAGAGTCTCTCCTCTGCAGAAGTCCGAAGTGGTCGAGATGGTGAAGAAGCAGGTGAAAGTGATAACCCTGGCCATTGGTGATGGAGCCAATGATGTGGGCATGATCCAGACAGCCCACGTGGGGGTTGGCATTAGTGGAAACGAGGGACTTCAGGCAGCCAATTCCTCAGACTACTCCATTGCTCAGTTCAAGTATTTGAAGAACCTCCTGCTCGTGCACGGCGCCTGGAACTATAATCGAGTGTCCAAGTGCATCCTGTACTGTTTCTACAAGAATATTGTTCTGTACATCATTGAGATCTGGTTTGCCTTTGTGAACGGCTTCTCTGGACAGATTCTTTTTGAGCGCTGGTGTATTGGTCTCTACAATGTGattttcaCTGCCCTGCCCCCTCTCACCCTGGGGATATTTGAGAGGTCTTGCCGCAAAGAAAATATGCTGAAGTACCCGGAACTGTACAAGACCTCTCAGAATGCAATGGGCTTCAACACCAAGGTTTTCTGGGCTCATTGTCTGAATGGCCTCTTCCACTCAGTTATTCTCTTCTGGTTTCCACTGAAAGCGTTCCAGCATGATACTGTgtttggaaatggaaaaactCCAGACTACCTGCTATTAGGGAACATGGTTTACACAtttgtggtGATCACAGTGTGTCTCAAAGCTGGACTCGAGACGTCATCCTGGACTATGTTCAGCCACATCGCAATCTGGGGGAGTATCGCCATGTGGGTGGTTTTCTTCGGGATCTACTCTTCTCTGTGGCCCGTCATTCCCCTGGCACCAGACATGTCGGGAGAGGCTGACATGATGTTTAGCTCCGGCGTGTTCTGGATGGGTCTTTTCTTCATCCCTGTGACGTCTCTGGTGTTTGATGTGGCATTGAAAGTAGTGAAAAGAAGTTGTTTTAAGACTCTAGTCGATGAAGTGCAAGAATTGGAGGCCAAGTCGCAGGATCCGGGAGCCGTGGTCCATGGGAAAAGCCTGACCGAGAGAGCCCAGCTCCTGAAGAACGTGTTTAAGAAGAGCACCGTGAGTCTGTACCGCTCGGAGTCCATGCAACAGAACTTGCTGCATGGTTACGCCTTCTCCCAGGACGAGAACGGCATCGTCTCCCAGTCGGAAGTGATCCGGGCCTACGACACGACTAAGCAGCGGTCCGAGGAGTGGTGAAGCAGCGTCCCCCGAGGGAGCAGGCCAAGGACCCCTTCACACAAACGCAGGGAGCTCTGTGTTTGAAAGCTGGCGGAAGTCACAGGGAGACTTTCTGAGCTTTAagatattttcttcttcaaaaaacaaatcatcatcataataaagtGTTCACTACTGTAGTTGTCTATGAAGCAGACATAAGCACCGTGCTTGCATTCTAACAAAGTCTGTATCTGAAGTTCACTCAGTATTCACTACGTCAGCAGGGCTTGAAAGTTGCATTCGTACGATTTGCCTGGTGTTGAGTATTTTTAAGACCCTGAAAGCAGGAGTGTGTCAGGCAGCTCTTTTATGATgtcttaaaaaaatctaaaatgcaattaatgtttgccaactgtatttttcttttaccgGGAGAAGGCACATATAAAATGAtcacaaatatgaaatactaGAGATGTATATGACAAATCCGACATGCCACACTGCTGGAACTTAAATTGCAATCCCAGAAAGTCTAGTTTGCCAAAGAAACATGATATTATCAGCGTTTTTAGGCTGTCGTTCTGAATGCAGTTTCAGCTCGAGACCGGGTCCGGGTCCTGTATTGAAGACCGCTTGCTTTTCTCACTCTGGATCGACACTCCATGAACTGGTTCAGACCCATTGCTTTCCAATCCCTTCTGTTAACAGCATTTAACTATGGCCTTACACGGGCGCGTCTCCTTGCCTTGGTCCATGATGACTTTTGGTGTTGATTCTTTAGATGGGTTGTCGATGTGCCTGCCTTCTGTAGTCGTCAATGCGGTTGCAAACTAGTGAACTTTTCAGATTTCTACCATTTGATACTGCTACCATTTTGCTCCTGTTCATCATTGATTGCGTTGTACATGTTTCTGAACTGCAATGTTCTTCACAACAGTGCCTAATCGAATTGAGATTCCCCTAATACGGTGTACTAAACACGTTCGTGCTAATGATAAGCTGGTAGTCGAGATTTAATTGTAACCCTCACTAAATTGCTCCTGTGCGTTTGACTCTAAGGCCCCAGTTGTTCACCACAGTGTTTCCTCCAGGCGCATTATATTCGCTGACAACGGCATGGCATGGTGGCGCTTCAAATAAGCTGTGATCTGATTCTGAAATGAACAAAGCTTATACCAAAATCGATGATTGAAATCCATTCATGCATaggcctctttttttttttttttttttttttaaacaagaa

Function

GO: NA

KEGG:

id description
K14802 DRS2, ATP8A; phospholipid-transporting ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116973 lncRNA downstream 163519 25947235 ~ 25948594 (-) False AMCG00017861
TU116972 lncRNA downstream 165159 25945141 ~ 25946954 (-) False AMCG00017861
TU116944 lncRNA downstream 302260 25809544 ~ 25809853 (-) True G93718
TU116912 lncRNA downstream 594513 25517286 ~ 25517600 (-) True G93689
TU116881 lncRNA downstream 731075 25372933 ~ 25381038 (-) True G93660
TU117044 lncRNA upstream 64263 26258096 ~ 26258367 (-) True G93802
TU117058 lncRNA upstream 159684 26353517 ~ 26353724 (-) True G93816
TU117088 lncRNA upstream 305081 26498914 ~ 26499177 (-) True G93843
TU117271 lncRNA upstream 1568853 27762686 ~ 27767331 (-) True G94008
TU117276 lncRNA upstream 1585204 27779037 ~ 27784050 (-) True G94012
AMCG00017870 mRNA downstream 14185 26096440 ~ 26097928 (-) True AMCG00017870
AMCG00017869 mRNA downstream 29346 26076728 ~ 26082767 (-) True AMCG00017869
AMCG00017867 mRNA downstream 62166 26033115 ~ 26049947 (-) True AMCG00017867
AMCG00017866 mRNA downstream 96171 26012488 ~ 26015942 (-) True AMCG00017866
AMCG00017861 mRNA downstream 154465 25945760 ~ 25957648 (-) True AMCG00017861
AMCG00017876 mRNA upstream 90132 26283965 ~ 26407993 (-) True AMCG00017876
AMCG00017877 mRNA upstream 243928 26437761 ~ 26439111 (-) True AMCG00017877
AMCG00017874 mRNA upstream 250585 26444418 ~ 26452343 (-) True AMCG00017874
AMCG00017875 mRNA upstream 264385 26458218 ~ 26467868 (-) True AMCG00017875
AMCG00017878 mRNA upstream 448549 26642382 ~ 26650068 (-) True AMCG00017878
TU117034 other downstream 2039 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 4308 26104026 ~ 26107805 (-) True G93795
TU116981 other downstream 96621 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other downstream 96621 26012661 ~ 26015492 (-) False AMCG00017866
TU116215 other downstream 2790159 23318126 ~ 23321954 (-) True AMCG00017780
TU117337 other upstream 1909466 28103299 ~ 28144589 (-) True AMCG00017906
TU117465 other upstream 2680328 28874161 ~ 28875923 (-) True G94172
TU117547 other upstream 3075402 29269235 ~ 29273168 (-) True G94238
TU117930 other upstream 4434155 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 6068943 32262776 ~ 32263531 (-) False AMCG00018000

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00014763 True 2913 mRNA 0.44 19 NC_007125.7 45028062 ~ 45179545 (+)
grasscarp (Ctenopharyngodon idella) CI01000000_05877229_05888197.mRNA True 1736 mRNA 0.49 8 CI01000000 5877194 ~ 5888821 (-)