RNA id: TU114819


Basic Information

Item Value
RNA id TU114819
length 1332
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G92050
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15055292 ~ 15056623 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTGACAAAGGAGGCGGAATAGTCCCAGATGCCGCAGTTGAGGCCGGCGGAGTGCTCCTGCAGCTCATACAATATCTCCTCCATCTCAAAGGAGGCCAGGATGTTCTctatgagcacagtggcctttATACTGCCCACTGGCAAACCCAGCTGTGCGGAGggccacaacacacacacacagcataatgccaacaacagcaacaatgtCATGAAGATAGAGTGAAACTGAGAAGCTGGTTTGATTAttacaaacaatattaatagAAGTGATGGCATGTCTATAATAAATAAGAGCTTCGCATTTAAACTAAGTAACATCAATGTATTTTCACTATATTTAAAACTACAAAGAGATTTATATTAATACAGAGCAGAtggtaaccccccccccccatactTGGATTGGGTGAGAGGATAAGCTTTTCTCAGCTggaaacatgaaaacacaatcaTGTTTCTATAGCTACAGACTTCAAGAACATTTACATTCAACCATTATACACACTCAAGATATAAACAGGACAAGAATCAATTTATTCTGTACTGGTAACTTTCTCCCACCTTTTGTTCAGTCCAAATGAATATGTTGTTCCACAGTCTTGCTTCAAGATGGCTTTCAATCTAAATTATAAAAAACTGAAGGCAGTATAAAATTGCACTATCGCTGGGAGTGACACTCAAGTGTCCGCAACTGTCATATTATCAGCAAATGCAATCTAAACAAATGCAGACTAATGTAatgaaagatttatttaaatgcttttaaattctTAACTGTCAAAACTCAGTTCTATCAGTtttatgagaagaaaaaaagacaggaagtTCACATTTCTTATATGATATTAAACattgcacacattttttttaaatgtatgaaaaatctTTGTATAGTTAACTTTTTTAtccattttatgattttttttaaattctgcagcACCCTGACATGCTtttgcataatacatttaagttgattgattgattgattgattgattgattgactgattagTGATGCTAGGGCTTAATTAGGGacaagaaacacaaactgaTTTAAAAGGCAATCTGCAGAAAGCTTGACATTGGTCATTCATAGTGTAGGACTTGAATGCAAGTGCAAGTAgtccttgtttaaaaaaaacaccaacaacaataCCTTGGATAGATAGAAAAACGGCccacttttgttttcaaacagcaGCTTTCCATTATGGAACATTAATAATCCAAAATCAAACAAGGGGCCGGGAACCTCTTTGCCGTTGACCTGTAAAGACACACAGATGGGAATGGCAGAACATTACGGAAGCTGTACTGCAGATCCAGTTTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114818 lncRNA downstream 608 15054463 ~ 15054684 (-) True G92049
TU114785 lncRNA downstream 129332 14924393 ~ 14925960 (-) True G92024
TU114762 lncRNA downstream 254891 14800090 ~ 14800401 (-) True G92006
TU114757 lncRNA downstream 290473 14760081 ~ 14764819 (-) False AMCG00017638
TU114571 lncRNA downstream 1010765 14044121 ~ 14044527 (-) True G91850
TU114820 lncRNA upstream 320 15056943 ~ 15057146 (-) True G92051
TU114844 lncRNA upstream 87912 15144535 ~ 15144735 (-) True G92067
TU114846 lncRNA upstream 105695 15162318 ~ 15162712 (-) True G92069
TU114876 lncRNA upstream 428634 15485257 ~ 15485762 (-) True G92093
TU114916 lncRNA upstream 1078757 16135380 ~ 16135707 (-) True G92132
AMCG00017645 mRNA downstream 2629 15043670 ~ 15052663 (-) True AMCG00017645
AMCG00017646 mRNA downstream 42524 15003446 ~ 15012768 (-) True AMCG00017646
AMCG00017638 mRNA downstream 290460 14760068 ~ 14764832 (-) True AMCG00017638
AMCG00017639 mRNA downstream 379217 14664881 ~ 14676075 (-) True AMCG00017639
AMCG00017632 mRNA downstream 397804 14614561 ~ 14657488 (-) True AMCG00017632
AMCG00017647 mRNA upstream 6804 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017648 mRNA upstream 19200 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017660 mRNA upstream 156874 15213497 ~ 15213745 (-) True AMCG00017660
AMCG00017659 mRNA upstream 166879 15223502 ~ 15234769 (-) True AMCG00017659
AMCG00017661 mRNA upstream 1729045 16785668 ~ 16797841 (-) True AMCG00017661
TU114641 other downstream 575505 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 4558188 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 6299385 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 6540337 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 7058697 7992137 ~ 7996595 (-) True G90939
TU114907 other upstream 810324 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 973779 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 973833 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 2411982 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 3406161 18462784 ~ 18463176 (-) True G92436

Expression Profile