RNA id: TU114913


Basic Information

Item Value
RNA id TU114913
length 442
RNA type TUCP
GC content 0.41
exon number 3
gene id G92129
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 16030402 ~ 16030905 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgaagtttgccaatgaacatctgaatgattcagaggagaactgggtgaaaatgtcatggtcagatgagaccaaaatcgagctctttggcatcaactcaacttgccgtgtttggaggaggaggaatgctgcctatgaccccaagaacaccaagaactccagaccttaatcccatagaaaatctgtggagagagctgaaggttcaagttgccaaacgtcagcctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgaactacaagaaatgtctgacctctgtgattgccaacaagggttttgctaccaagtactaagtcgaaggggtcaaatacttatttcactcattaacatgcaaatcaatttataactttttttaaatgcatttttctggattttaccattaaaattatagactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114876 lncRNA downstream 544640 15485257 ~ 15485762 (-) True G92093
TU114846 lncRNA downstream 867690 15162318 ~ 15162712 (-) True G92069
TU114844 lncRNA downstream 885667 15144535 ~ 15144735 (-) True G92067
TU114820 lncRNA downstream 973256 15056943 ~ 15057146 (-) True G92051
TU114819 lncRNA downstream 973779 15055292 ~ 15056623 (-) True G92050
TU114916 lncRNA upstream 104475 16135380 ~ 16135707 (-) True G92132
TU114920 lncRNA upstream 135734 16166639 ~ 16182063 (-) True G92134
TU114921 lncRNA upstream 151224 16182129 ~ 16182328 (-) True G92135
TU114934 lncRNA upstream 284140 16315045 ~ 16315522 (-) True G92146
TU114936 lncRNA upstream 399551 16430456 ~ 16430711 (-) True G92148
AMCG00017659 mRNA downstream 795633 15223502 ~ 15234769 (-) True AMCG00017659
AMCG00017660 mRNA downstream 816657 15213497 ~ 15213745 (-) True AMCG00017660
AMCG00017648 mRNA downstream 950096 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017647 mRNA downstream 955883 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017645 mRNA downstream 977739 15043670 ~ 15052663 (-) True AMCG00017645
AMCG00017661 mRNA upstream 754763 16785668 ~ 16797841 (-) True AMCG00017661
AMCG00017663 mRNA upstream 1356579 17387484 ~ 17394619 (-) True AMCG00017663
AMCG00017664 mRNA upstream 1394506 17425411 ~ 17462601 (-) True AMCG00017664
AMCG00017665 mRNA upstream 1437701 17468606 ~ 17487497 (-) True AMCG00017665
AMCG00017670 mRNA upstream 1483978 17514883 ~ 17531328 (-) True AMCG00017670
TU114907 other downstream 162755 15866947 ~ 15867647 (-) True G92124
TU114641 other downstream 1550615 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 5533298 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 7274495 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 7515447 8496495 ~ 8514955 (-) True AMCG00017520
TU115048 other upstream 1437700 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 2431879 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 3382082 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 3387296 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 7287221 23318126 ~ 23321954 (-) True AMCG00017780

Expression Profile