RNA id: TU115297


Basic Information

Item Value
RNA id TU115297
length 693
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G92444
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18492538 ~ 18493230 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAAAGACTGTTTCTTCTCACAAACGTGAGCATCAATGTATAACACCACAGTTCCAGACAGACTTCAGTGTTTTCAAACTACTGTATTGTATGTAGGTTCTCACTCAGTAAGAGATACATTTTGACAACAAGACTGAAAATACGAAGTACTAGATAGACCCGTCACACAAAAAAGAACATGTATTCTTTTGTCaccatacaattatatacaagGCATCATTTAGGTGGTACAAAACAGGGAATTTGTATTGAGGTATTTGTCAATTTCACATATAAAAGCTtacagacattaaaaacaacagtcAAAGTACATCAGCACCAAATATATTTCGATAggtattatgtaaaaaaaacacatttagaaaatatccacattaaataatgcaattactACTACTTatgcattaacattaaaaaaaatctgaacacaATTCAGTGGGATTTAAATCTCTTCTACACTACTTTAATTAACACAGTATAAATAAGATCCAATACAGTGCAATGGTCTGCCTGAGTCGGGTGTATTActcattgttagttcaattcATGCTGCTACAACACTTCATAACAGTGTGAAAAGGCTCCTCTCCCCGTCGCATGTTAATTCAAGGCGTAGTTAAATTGGTTTGAAAACTTTTCATGCTTCCTTTTGTCGATTCGATTCATTGCTTCTGTCACACGTTTCACTGAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115296 lncRNA downstream 2445 18489551 ~ 18490093 (-) True G92443
TU115295 lncRNA downstream 6534 18485267 ~ 18486004 (-) True G92442
TU115294 lncRNA downstream 8746 18483473 ~ 18483792 (-) True G92441
TU115293 lncRNA downstream 10464 18481771 ~ 18482074 (-) True G92440
TU115288 lncRNA downstream 30836 18461368 ~ 18461702 (-) True G92435
TU115324 lncRNA upstream 269867 18763097 ~ 18763661 (-) True G92464
TU115365 lncRNA upstream 356832 18850062 ~ 18850628 (-) True G92499
TU115412 lncRNA upstream 580008 19073238 ~ 19073865 (-) True G92539
TU115414 lncRNA upstream 632830 19126060 ~ 19126349 (-) True G92541
TU115513 lncRNA upstream 1119475 19612705 ~ 19613182 (-) True G92608
AMCG00017687 mRNA downstream 223790 18232408 ~ 18268748 (-) True AMCG00017687
AMCG00017686 mRNA downstream 303185 18181565 ~ 18189353 (-) True AMCG00017686
AMCG00017688 mRNA downstream 315527 18174151 ~ 18177011 (-) True AMCG00017688
AMCG00017684 mRNA downstream 550373 17928433 ~ 17942165 (-) True AMCG00017684
AMCG00017680 mRNA downstream 658721 17825058 ~ 17833817 (-) True AMCG00017680
AMCG00017694 mRNA upstream 4899 18498129 ~ 18501874 (-) True AMCG00017694
AMCG00017695 mRNA upstream 234469 18727699 ~ 18737258 (-) True AMCG00017695
AMCG00017699 mRNA upstream 289500 18782730 ~ 18790340 (-) True AMCG00017699
AMCG00017698 mRNA upstream 307769 18800999 ~ 18807177 (-) True AMCG00017698
AMCG00017697 mRNA upstream 330170 18823400 ~ 18828559 (-) True AMCG00017697
TU115289 other downstream 29362 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 1018199 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 2461633 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 2461633 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 2624891 15866947 ~ 15867647 (-) True G92124
TU115494 other upstream 919757 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 924971 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 4824896 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 4824896 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 4824896 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile