RNA id: TU115412


Basic Information

Item Value
RNA id TU115412
length 608
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G92539
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19073238 ~ 19073865 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgacttagtacttggtggcaaaatcCTTGTTGGCAATctcagaggtcagacgtttcttgtagttggctaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacgtttggcaactcaaaccttcagctccctccacagattatccatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccactcctatgttgccttggctgtgtgttttgggtcattgtcatgctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgacggtacatggccccgtccatcgtccctttgatgcggtgcagttgtcctgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggggatggtgttcttggggtcattcctcctcctccaaacacggcgacttgattttggtctcatctgaccacaagattttcacccagttctcctctgaatcattcagatgttggcaaacttcagacggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115365 lncRNA downstream 222610 18850062 ~ 18850628 (-) True G92499
TU115324 lncRNA downstream 309577 18763097 ~ 18763661 (-) True G92464
TU115297 lncRNA downstream 580008 18492538 ~ 18493230 (-) True G92444
TU115296 lncRNA downstream 583145 18489551 ~ 18490093 (-) True G92443
TU115295 lncRNA downstream 587234 18485267 ~ 18486004 (-) True G92442
TU115414 lncRNA upstream 52195 19126060 ~ 19126349 (-) True G92541
TU115513 lncRNA upstream 538840 19612705 ~ 19613182 (-) True G92608
TU115514 lncRNA upstream 539376 19613241 ~ 19617787 (-) True G92609
TU115574 lncRNA upstream 792107 19865972 ~ 19866417 (-) True G92657
TU115579 lncRNA upstream 793553 19867418 ~ 19867636 (-) True G92660
AMCG00017701 mRNA downstream 148802 18913165 ~ 18924436 (-) True AMCG00017701
AMCG00017700 mRNA downstream 161367 18907263 ~ 18911871 (-) True AMCG00017700
AMCG00017702 mRNA downstream 176731 18890221 ~ 18896507 (-) True AMCG00017702
AMCG00017704 mRNA downstream 183712 18878222 ~ 18889526 (-) True AMCG00017704
AMCG00017703 mRNA downstream 195048 18865756 ~ 18878190 (-) True AMCG00017703
AMCG00017707 mRNA upstream 122256 19196121 ~ 19202825 (-) True AMCG00017707
AMCG00017709 mRNA upstream 293849 19367714 ~ 19384083 (-) True AMCG00017709
AMCG00017711 mRNA upstream 352174 19426039 ~ 19433689 (-) True AMCG00017711
AMCG00017715 mRNA upstream 577651 19651516 ~ 19654680 (-) True AMCG00017715
AMCG00017716 mRNA upstream 583068 19656933 ~ 19659528 (-) True AMCG00017716
TU115289 other downstream 610062 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 1598899 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 3042333 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 3042333 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 3205591 15866947 ~ 15867647 (-) True G92124
TU115494 other upstream 339122 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 344336 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 4244261 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 4244261 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 4244261 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile