RNA id: TU115611


Basic Information

Item Value
RNA id TU115611
length 1534
lncRNA type inter_gene
GC content 0.34
exon number 8
gene id G92682
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19905992 ~ 19920152 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgaacattaaaacaacaatgtatCACTCCCATTTACTAATCATATcattctctctcctccccctttCATTACCTCAGATTTGACTTCCCCAGATAACTCAACAAATTTGACTATCCCAACTAACCAACCAAAATCATCaaccacaaaacaaaccacTCTAAATAACTCATCTTCTGATACAACTGTGAATAAATCAAGTCATGACAAGGATGCCCAACGTAACAATAAAGAATATAACAATGCATCTAAAGAGGAGCAACCTGAATCAACAACTAATTCGAAGACATTGTGGGTTATACTGCCTGTCTTGGTTGTGCTGGTGGTTATTGTCATCATAGTTATGAAGTTCAAATGTTTGAAGATCCACTCGGATAACACAGATGAATCAGACAATTGTGCAGAAAAGTGTGCCGGTGCCAAAGGTGTTCAGCTTCTTGGAGTAAAATCCTCTGGAGGTGAAGAAAATGTGGCAGTAAGATGAAATGAAGATCTGAAGATGTTCTCTAACATAAGGGGTCAAACTAAAGCCAGTAGTTTCTTGATTTTTATACAGTGTCTCACAGAAGCTTACTTTTACAACAAAAAAGGACATATAAGAAgagttaaatgtattaacaattaGTAAATGGTACTACTACTGGTACTACTATTTTGCAGGATCTCAGAAATAATTGGACagcattataatgtttaatattttaacttcaagaaacatgttttctgaAAGAAGTAATTTAGATTAAGGGcccattgaaatacaaaatgtttgtgTTCCGAATCGGTCGCAGAGGCATTCATGGCATCAATGCACATTGATTATGCCTAACTAAACTTTCATGGTATAAAATCTGAAACGATCCATAATGTTTCACATACCAATGCTGTGGGAGTGGTCACATTCTGGAACTATGACTTATTCTGTTGGAGACTGAAGCACTTAATAAgcacttaaaataatgtatttggtCTAAGGTAACTGGCagatattttgaagaaaatcTTGGTATTTATTGGTGAAGTTTTGAAGTTGGGATATGCCAATGttcaatttttaatacaaatgtttcaaatCAACTAGACTGATGTCTAACTAAGAAAGTTTTTCAGGTTTgagctgaataaataaatgtaatcaaatactTCTGTGAGGCACTGTACCCATGAAAGCATTCCTATATATTCTTCAGTTGTCAGGCAACTAATTCATACTAacatatcaaatatttatactgtatagTGTTGTGCACTGAGCTCTGTACTGGATGCTCAAATACCCCCTGAAGCACCCATCTgaagttttgtattgttttaagatAACTGTATAaaagtgtatacatttttttttgttcttttcatgttttagttCTTTTCAATAAGCAGTTTTTTACCATATCAGGTTCAATCATTCtctataattgtaatttgcTTGACCACGCTATTGGTATTGTATTGTtgaatgcattcatatttaatggaGTTGACTGGCAAGTAAATAAATCTTTCTGAATCATGTTGGGCTAAGAGTAATCTGTA

Function

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115579 lncRNA downstream 38356 19867418 ~ 19867636 (-) True G92660
TU115574 lncRNA downstream 39575 19865972 ~ 19866417 (-) True G92657
TU115514 lncRNA downstream 288205 19613241 ~ 19617787 (-) True G92609
TU115513 lncRNA downstream 292810 19612705 ~ 19613182 (-) True G92608
TU115414 lncRNA downstream 779643 19126060 ~ 19126349 (-) True G92541
TU115645 lncRNA upstream 381848 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA upstream 381848 20302000 ~ 20317431 (-) True AMCG00017725
TU115649 lncRNA upstream 495154 20415306 ~ 20415612 (-) True G92714
TU115749 lncRNA upstream 703991 20624143 ~ 20624420 (-) True G92798
TU115751 lncRNA upstream 714520 20634672 ~ 20634880 (-) True G92800
AMCG00017724 mRNA downstream 15463 19888936 ~ 19890529 (-) True AMCG00017724
AMCG00017728 mRNA downstream 36535 19868999 ~ 19869457 (-) True AMCG00017728
AMCG00017720 mRNA downstream 95864 19696553 ~ 19810128 (-) True AMCG00017720
AMCG00017716 mRNA downstream 246464 19656933 ~ 19659528 (-) True AMCG00017716
AMCG00017715 mRNA downstream 251312 19651516 ~ 19654680 (-) True AMCG00017715
AMCG00017727 mRNA upstream 28040 19948192 ~ 19954812 (-) True AMCG00017727
AMCG00017726 mRNA upstream 53266 19973418 ~ 19986615 (-) True AMCG00017726
AMCG00017725 mRNA upstream 386174 20306326 ~ 20345619 (-) False AMCG00017725
AMCG00017731 mRNA upstream 473725 20393877 ~ 20408258 (-) True AMCG00017731
AMCG00017729 mRNA upstream 538063 20458215 ~ 20482752 (-) True AMCG00017729
TU115494 other downstream 486636 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 486636 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 1442816 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 2431653 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 3875087 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 3397974 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 3397974 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 3397974 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 6092509 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 6092509 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile