RNA id: TU115776


Basic Information

Item Value
RNA id TU115776
length 3451
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G92822
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20672065 ~ 20676278 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGCTCTTGCTCTTCATAATTACGgagttatatatgtatagagTAAATATAATCACAAGTACTGGAGTTACAAATTAAGTGAGAGATACAGTGATCATTGAAAGTATCTGTATTGATGTTTAAGGCCtcttttgcatttcaaagtgTTGCAGGTGTCTCTTGCCTACCTCTTTCACCCAGGCCATGAGCTGCTTTAGAGATTCCACATTCTTGTGCTCCCATCTATGTACAAGGAACCCTTCCATCCGGAGTTGCTTGAAAATCATATGGGGTTGAACATATGGACCTGAGGGAAAGAAAATGCCAAATCATATTTCAAGTTTAGACAAAACAGTGTAGTATGATATAACTATTTCGGTTGGTAAATACATTGGAAAATCTCCCAATTTTGCTTCCGGTTTCAAATTGTACCAAAATAGGTAAATTATCCAGGATCACATGCTTTGTCAGTTCCACTTGATGGGGGGTGACTTAAATCATGATGGGGTACGAgcttgtaatttgcaattcataGGTAGGTCACAATTTTGATCTGGTCTTAACCTTAGCCTGGTTACTTTTACTTGGGTTAAAGAGACAGTTATCctaatatttatctttttttttttttttttggtagtggtcatttaaataatggaaaatatatgtatacagataCATAGGTCTCTCCCAAGATCTTTGAATGTACTTTATCACTTCATATTGATTGTACCCATTGATCAGTTCAGGACCGATTAATTAAGTTAATGGGGAAAACAGCATGAAGAGTTTTTATAAGAAAAAGCAGAATGTTTAGAACATTGTTGgccttttaaaatcatgaaGAGTAGTTTatgaatgaacaaaaaaactatttgcttAACAAATGgtctttcaaaaatgtaatccGATACAAATTTTACACATTTGATCAAATTCTCAAAAGTCAGTAAAATTCTGTTTAATTAgggaaacaatataaaaaaatcttgcCTGTGACCATTTGTCATGTACTTCATTAGGAGCTAAATCTCGCCCTCTAGTGGTTGAATAAACTGTGACTGATCTGTGGGCCAACATGGCTACAATACACCACACATATATAATCCCATTCAAACCTTCATCAAAAACATTCACATCCACACATGATATGAACATAATCATACAAAAAACTATTACATATCCATCAACCTGCAAAAACACTTTCTGGGTAATAGAAAATATACATGCTAGTGTAAATTGTGGTGAATGGTAGATTTGTCTTTTGGTTTCATGCAGTTTCTGTGCAGCACATTCAGTCCATACCAGTTTGTGGAGTTGTATCATTATACAAAGATATGCTTCCACACACGGCAATCCTTCCAAATGTTTTCATCTGAGGAATAGCAACACTTGAAAAATGGCCTCCACATTCTCAAATAAGCAGTCATAGCCATCTGGGGATGCTTTTTTCAGTGCATCCTCTAAAGAGCTCACCGTTTTATAGTTGAACACCTCATCAAATccaatttcttttaaataagcAATCTTTTCATCAGATCCAGCACACCCAATTACTTTGCAgccctgtaaaataaaattctatgtaaaaaaattactaataatattacCTTGCATCATGTTAACAGTCTGGCATTTTATGTAGATTAACCTCACAGATTTCactcagaaaaaaagaaaacagttgcCCCTTTAAATCTTTTTAACATCTATGGTCATAAAATCCAGAGTTCTCATACTCTGTTTGTGCTCAACCCTACTGATCTTTGATTTCTGTGGCACAATCTTTACTAAGTATTTCTGATAAAGACAGCGCAAGTGCTTAGCATAGTCATTTTGAATAGGCTTTTAGTGTACCCTTGACACACAAAGCAAATAGAAGTCTGCACGCtatcagttaaaaaagaaaagttcctaAATAAACAGTGTAACAACATTATGAATGTCAGGCCTGGAGACAACAGTTGGAAATCTACATAACAGCAAAcactttgtatatatacacacaccaccgcaaactggctctaaccagaatagaaaggaGTGGGAGGCCCTGGTGCACAAGTGAGCAacaggacaaatacattagagtgtctagtttgagaaacacgcctcacaggtcctcaactggcagcttcattaaatcgtacccgcaaaacaccagtctcaacgtcaacagtgaagaggcgactccgggatgctggccttctaggcagagttgcaaagaaaaagccatatctcagactggccaataaaaagaaaatattaagatgggcaaaagaacacagacactggacagaggaagattggaaaaaagtgttacggacagacaaatctaagttagaggtgttcggatcacaaagaagaacattcgtgagacgcagaccaaatgaaaagatgctggaggagtgctggccgccatctgtcaagcatggtggaagcaatgtgatggtctgggggtgctttggtggtggtaaagtgggagatttgtacagggtaaaagggatcttgaagaaggaaggctatcactccattttgcaacgccatgccataccctgtggacggcacttgattggagccagtttcctcctacaacaggacaatgatctaaagcacagctccaaactatgcaagaactatttagggaagaagcagtcagctggtattctgtctataatggagtagacagcacagtcaccagatctcaaccctattgagctgttgtgggagcagcttgaccgtatggtacgtaagaagtgcccatcaagccaatccaacttgtgggaggtggttcaggaagcatggggtgaaatctcttcagattacctcaacaaattgacaactagaatgccaaaggtctgcaaggctgcaattgctgcaaatggaggattcttggacaaaaaaaaaataatatttcaattaaaaaaatatatatatttctaaccttgtcaatgactatatttcctattaattttgctctatttctaagtgaccccaaacttttgaacggtagtgtatatatttttttaaaggacaaaagAGAACGTTAAATACATAacttaatattttggttttaaacatcATGCTACCAATAACTCATCACTTCAGCATGTAGGCTACAAGGTATTAACAATTATCCAGATTATTCAAAATCCACAGAGAAGCATTCACACAAGACACCAACCTTGATTTTAGCAATCTGCCCCACCACGGACCCAACAGCCCCAGCTGCTGCATTAACCAGGACCGTTTCTCCTGCTTTAATCTCACATACTTCCATCAAGCCGTACAGTGCGGTTAAACCCAGGCATTCCAAGGGTCCCCAATGCCAGGGACTTGGGGATGTTTTCTGGCCAATCCGAGAGAAGAGGCGTCAGATCCTTGCCATCAGAAATCGAATGGGTCCTCCACCCACACCTGGAGACTAAATAACTGCCGACTGCAAAACTGGAGTTTCTGCTTTCAACAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115751 lncRNA downstream 37185 20634672 ~ 20634880 (-) True G92800
TU115749 lncRNA downstream 47645 20624143 ~ 20624420 (-) True G92798
TU115649 lncRNA downstream 256453 20415306 ~ 20415612 (-) True G92714
TU115645 lncRNA downstream 313440 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA downstream 354634 20302000 ~ 20317431 (-) True AMCG00017725
TU115778 lncRNA upstream 381 20676659 ~ 20734422 (-) True G92823
TU115794 lncRNA upstream 141397 20817675 ~ 20822960 (-) True G92836
TU115796 lncRNA upstream 144188 20820466 ~ 20821995 (-) True G92838
TU115857 lncRNA upstream 452193 21128471 ~ 21128999 (-) True G92892
TU115940 lncRNA upstream 1297706 21973984 ~ 21974289 (-) True G92943
AMCG00017749 mRNA downstream 4393 20653145 ~ 20667672 (-) True AMCG00017749
AMCG00017737 mRNA downstream 44082 20626084 ~ 20627983 (-) True AMCG00017737
AMCG00017741 mRNA downstream 49960 20620406 ~ 20622105 (-) True AMCG00017741
AMCG00017733 mRNA downstream 55836 20603355 ~ 20616229 (-) True AMCG00017733
AMCG00017739 mRNA downstream 70664 20595312 ~ 20601401 (-) True AMCG00017739
AMCG00017748 mRNA upstream 13943 20690221 ~ 20741395 (-) True AMCG00017748
AMCG00017751 mRNA upstream 71877 20748155 ~ 20774424 (-) True AMCG00017751
AMCG00017752 mRNA upstream 205215 20881493 ~ 20913956 (-) True AMCG00017752
AMCG00017753 mRNA upstream 453079 21129357 ~ 21136560 (-) True AMCG00017753
AMCG00017759 mRNA upstream 619769 21296047 ~ 21304123 (-) True AMCG00017759
TU115494 other downstream 1252709 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 1252709 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 2208889 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 3197726 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 4641160 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 2641848 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 2641848 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 2641848 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 5336383 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 5336383 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU349257 True 213 lncRNA 0.22 1 CI01000093 1152208 ~ 1152420 (+)
rainbow trout (Oncorhynchus mykiss) TU67725 True 203 lncRNA 0.42 1 NC_048565.1 55531070 ~ 55531272 (-)
rainbow trout (Oncorhynchus mykiss) TU201717 True 256 lncRNA 0.46 1 NC_048566.1 69713368 ~ 69713623 (+)
rainbow trout (Oncorhynchus mykiss) TU845625 True 3894 lncRNA 0.40 1 NC_048572.1 72975230 ~ 72979123 (-)
eurasian perch (Perca fluviatilis) TU78127 True 782 lncRNA 0.30 3 NC_053117.1 377790 ~ 378658 (-)
striped catfish (Pangasianodon hypophthalmus) TU201717 True 5207 lncRNA 0.38 1 NC_047604.1 22986696 ~ 22991902 (-)
bowfin (Amia calva) TU201717 True 3976 TUCP 0.42 4 CM030143.1 15432337 ~ 15439031 (+)
tiger barb (Puntius tetrazona) TU221146 True 2490 TUCP 0.36 1 NC_056720.1 4156492 ~ 4158981 (-)
mexican tetra (Astyanax mexicanus) TU67725 True 1015 lncRNA 0.45 1 NC_035902.1 6497994 ~ 6499008 (+)