RNA id: TU115778


Basic Information

Item Value
RNA id TU115778
length 722
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G92823
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 20676659 ~ 20734422 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taatggtaggtAGCACCTTCAAATGTAAAAACCCAGCTGAAGATAGTGTATTGGTAGGTAGCACCTTTCCTGTGATTCGTGATCTTAATTCAGTGCCCTTTTCCCAAATAAAGTTGAGCAAATGTCCATAGGGACTCTGCATAGACATTCTTACTTCATTTTTTAGTAAGAtcaaatgtactttatttaaacccagttaatgtaaattattacaGGTTAAAACAAGCAAAGGAACACGGCTGTCCTGCAGTCTCGGATGCATTGCAATCCCTTACAGTGCTGCTCACAGTTCTTGAATTAAACATTGCAtgttaaactgaacaaaagcaatcattttcaggtttttaagAAGGTGGCGACTGAACAAGATCAACTGAACTTGCAGAACAGTAGCCCTCATGGCCCAGGGATGAAGTTACATGGTGAAGAGCGGAAATTATCTCATTGATTGTTTAgtagttttaattaaaggaatATTAAAGGCGTTAGACAAGGAAGACTACTTTCCTACAATGTTAGGTGGCACATACAGATTACAAGTGCTTCAAAAATAAACTCCATCAGACTTTCACAATGGCCTTTCCAATGTTGTCTCCTTTCAGCATCCCCATGAAGGCTGCGGGCATTTTGTCAAAGCCCGTGGTGATGTGTTCGCTGTACTTCAGTTTTCCCTACACACGGGACATGACACACTCATCATCCAGTTCAATCgattaataaac

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115776 lncRNA downstream 381 20672065 ~ 20676278 (-) True G92822
TU115751 lncRNA downstream 41779 20634672 ~ 20634880 (-) True G92800
TU115749 lncRNA downstream 52239 20624143 ~ 20624420 (-) True G92798
TU115649 lncRNA downstream 261047 20415306 ~ 20415612 (-) True G92714
TU115645 lncRNA downstream 318034 20302000 ~ 20358625 (-) False AMCG00017725
TU115794 lncRNA upstream 83253 20817675 ~ 20822960 (-) True G92836
TU115796 lncRNA upstream 86044 20820466 ~ 20821995 (-) True G92838
TU115857 lncRNA upstream 394049 21128471 ~ 21128999 (-) True G92892
TU115940 lncRNA upstream 1239562 21973984 ~ 21974289 (-) True G92943
TU115945 lncRNA upstream 1310558 22044980 ~ 22124742 (-) True G92947
AMCG00017749 mRNA downstream 8987 20653145 ~ 20667672 (-) True AMCG00017749
AMCG00017737 mRNA downstream 48676 20626084 ~ 20627983 (-) True AMCG00017737
AMCG00017741 mRNA downstream 54554 20620406 ~ 20622105 (-) True AMCG00017741
AMCG00017733 mRNA downstream 60430 20603355 ~ 20616229 (-) True AMCG00017733
AMCG00017739 mRNA downstream 75258 20595312 ~ 20601401 (-) True AMCG00017739
AMCG00017751 mRNA upstream 13733 20748155 ~ 20774424 (-) True AMCG00017751
AMCG00017752 mRNA upstream 147071 20881493 ~ 20913956 (-) True AMCG00017752
AMCG00017753 mRNA upstream 394935 21129357 ~ 21136560 (-) True AMCG00017753
AMCG00017759 mRNA upstream 561625 21296047 ~ 21304123 (-) True AMCG00017759
AMCG00017758 mRNA upstream 582045 21316467 ~ 21369489 (-) True AMCG00017758
TU115494 other downstream 1257303 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 1257303 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 2213483 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 3202320 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 4645754 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 2583704 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 2583704 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 2583704 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 5278239 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 5278239 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile