RNA id: TU116130


Basic Information

Item Value
RNA id TU116130
length 551
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G93092
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23294819 ~ 23295369 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCCATCCTGTCAAACTTCACAAACCAGCTCTAGATTTTAATTATGATAAAGCAGGAGTGAATGCACCTCCTCCCGCAGAAAGCCCACTTTGAAGTGCTGCTGTGTGTACACAAGGAACAGGAGAGATGTTGATTGGGGCGTCTCAGGGTGGATGTATATTGGCGGAATTAACGTCGCTGCTTTCAAACAGCAGATAGCAATCCCCCCCAACCACCACATGTGAGTGTTTGTATGGATCAATGTACTTTAATAATTtatggatgattgtttttaaaaaaagattttaaaaatgaatcttaattgtttttaaagatttagttgcttttaaaccacattgtttagggttttttggtttagttttgttatattcttttgtcaaatacattgaccgttttggatttaattttaaatgcattggaccttttttgtttgttttttatttttacctttttaattgtttctttattttgtccaatgcattttcagttattttcaatgtattcgacttttatgttggtgagcagtttttgcttttatcacgtttgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116128 lncRNA downstream 4138 23290332 ~ 23290681 (-) True G93090
TU116067 lncRNA downstream 455385 22839151 ~ 22839434 (-) True G93038
TU116062 lncRNA downstream 490435 22801371 ~ 22804384 (-) True G93033
TU116057 lncRNA downstream 516720 22777804 ~ 22778099 (-) True G93028
TU116052 lncRNA downstream 603287 22690675 ~ 22691532 (-) True G93026
TU116205 lncRNA upstream 431 23295800 ~ 23296246 (-) True G93159
TU116222 lncRNA upstream 31156 23326525 ~ 23329744 (-) True G93165
TU116235 lncRNA upstream 148842 23444211 ~ 23540120 (-) True G93173
TU116417 lncRNA upstream 612206 23907575 ~ 23910679 (-) True G93324
TU116446 lncRNA upstream 739327 24034696 ~ 24037610 (-) True G93350
AMCG00017777 mRNA downstream 15777 23264034 ~ 23279042 (-) True AMCG00017777
AMCG00017776 mRNA downstream 100275 23169573 ~ 23194544 (-) True AMCG00017776
AMCG00017763 mRNA downstream 928772 22309249 ~ 22366047 (-) True AMCG00017763
AMCG00017757 mRNA downstream 1891559 21399301 ~ 21403260 (-) True AMCG00017757
AMCG00017758 mRNA downstream 1925330 21316467 ~ 21369489 (-) True AMCG00017758
AMCG00017782 mRNA upstream 1319 23296688 ~ 23313459 (-) True AMCG00017782
AMCG00017780 mRNA upstream 22724 23318093 ~ 23321930 (-) False AMCG00017780
AMCG00017781 mRNA upstream 35575 23330944 ~ 23345917 (-) True AMCG00017781
AMCG00017787 mRNA upstream 60237 23355606 ~ 23388495 (-) True AMCG00017787
AMCG00017789 mRNA upstream 116292 23411661 ~ 23422126 (-) True AMCG00017789
TU115494 other downstream 3875463 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 3875463 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 4831643 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 5820480 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 7263914 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 22757 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 22757 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 22757 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 2717292 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 2717292 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile