RNA id: TU116235


Basic Information

Item Value
RNA id TU116235
length 690
lncRNA type read_through
GC content 0.33
exon number 2
gene id G93173
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23444211 ~ 23540120 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatatatatatactgtacatttgtacAGTAAATCCTATTTAGTTAGCAGGTTTCATAGCCCACAATATAGATACAATgtatatagatgtatttttaacatgattTGAACATTGAACATGTCTATATTTCCTGCTAACATTGGTGaggtttttctgtttgtcttgaGGAAATGTTTGGTTGCATAATGATTCATTCCAGAGCAGTCAGGGTTTAGATATTACCAATATTTTGGCACACAATTCAGTTTTGCAATACACCCTTTTCATTTACACATGGGGAGTATTCCAAATACAAGCTTTGGTTTAGTACTGGGAAACCGTGGTGAAACAGGGTTTGCAGTTCAGAAGGTTTTTGATAGATTTATTGTGAGATTTAGCACCACGAATCGCATATGgtttacattcataaataattgaaattatttCTCCAACCATACAGGCACAAAAAATgccattcatttttatattaatctcCAAACTCGTATCGTAACAACCGCATCAACCTTACATAGAAGCTCAAAAGCTCATGTCAGTATGCGAGTATCGCATCTgtatcataataaaatatttttttaactaaattaacAAAGTCTGGTCAAGTGGTTTATTTCTACACACCCATGTATTTTGCTACGATTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116222 lncRNA downstream 114467 23326525 ~ 23329744 (-) True G93165
TU116205 lncRNA downstream 147965 23295800 ~ 23296246 (-) True G93159
TU116130 lncRNA downstream 148842 23294819 ~ 23295369 (-) True G93092
TU116128 lncRNA downstream 153530 23290332 ~ 23290681 (-) True G93090
TU116067 lncRNA downstream 604777 22839151 ~ 22839434 (-) True G93038
TU116417 lncRNA upstream 367455 23907575 ~ 23910679 (-) True G93324
TU116446 lncRNA upstream 494576 24034696 ~ 24037610 (-) True G93350
TU116452 lncRNA upstream 504074 24044194 ~ 24046369 (-) True G93355
TU116513 lncRNA upstream 725252 24265372 ~ 24266487 (-) False AMCG00017819
TU116522 lncRNA upstream 761300 24301420 ~ 24301980 (-) True G93399
AMCG00017788 mRNA downstream 13998 23423691 ~ 23430213 (-) True AMCG00017788
AMCG00017789 mRNA downstream 22085 23411661 ~ 23422126 (-) True AMCG00017789
AMCG00017787 mRNA downstream 55716 23355606 ~ 23388495 (-) True AMCG00017787
AMCG00017781 mRNA downstream 98294 23330944 ~ 23345917 (-) True AMCG00017781
AMCG00017780 mRNA downstream 122281 23318093 ~ 23321930 (-) False AMCG00017780
AMCG00017795 mRNA upstream 77560 23617680 ~ 23627418 (-) True AMCG00017795
AMCG00017796 mRNA upstream 93335 23633455 ~ 23646547 (-) True AMCG00017796
AMCG00017807 mRNA upstream 131524 23671644 ~ 23690436 (-) True AMCG00017807
AMCG00017805 mRNA upstream 210251 23750371 ~ 23760237 (-) True AMCG00017805
AMCG00017808 mRNA upstream 255793 23795913 ~ 23812448 (-) True AMCG00017808
TU116215 other downstream 122257 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 122257 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 122257 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 4024855 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 2472541 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 2472541 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 2563906 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 2568940 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 4563179 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile